Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   NSQ79_RS08270 Genome accession   NZ_CP150200
Coordinates   1795668..1796705 (-) Length   345 a.a.
NCBI ID   WP_049528398.1    Uniprot ID   A0AB37CK46
Organism   Streptococcus sp. FSL W7-1342     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1790668..1801705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS08245 (NSQ79_08245) ilvD 1790939..1792642 (-) 1704 WP_002884316.1 dihydroxy-acid dehydratase -
  NSQ79_RS08250 (NSQ79_08250) - 1792770..1793951 (+) 1182 WP_049528392.1 NAD(P)/FAD-dependent oxidoreductase -
  NSQ79_RS08260 (NSQ79_08260) trmB 1794168..1794809 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NSQ79_RS08265 (NSQ79_08265) - 1794819..1795610 (-) 792 WP_002884270.1 phosphotransferase family protein -
  NSQ79_RS08270 (NSQ79_08270) pptB 1795668..1796705 (-) 1038 WP_049528398.1 ABC transporter permease Regulator
  NSQ79_RS08275 (NSQ79_08275) pptA 1796702..1797433 (-) 732 WP_149561190.1 ABC transporter ATP-binding protein Regulator
  NSQ79_RS08280 (NSQ79_08280) - 1797498..1797917 (+) 420 WP_037599159.1 HIT family protein -
  NSQ79_RS08285 (NSQ79_08285) - 1797914..1798213 (+) 300 WP_014634939.1 hypothetical protein -
  NSQ79_RS08290 (NSQ79_08290) - 1798394..1798561 (-) 168 WP_014634940.1 hypothetical protein -
  NSQ79_RS08295 (NSQ79_08295) - 1799137..1799745 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  NSQ79_RS08300 (NSQ79_08300) - 1799763..1799888 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40130.62 Da        Isoelectric Point: 10.6158

>NTDB_id=966116 NSQ79_RS08270 WP_049528398.1 1795668..1796705(-) (pptB) [Streptococcus sp. FSL W7-1342]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLMLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWAFIQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQS
GLNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILRRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLITQIVLVLTLVQAICLFDLKF
SLILVGIMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=966116 NSQ79_RS08270 WP_049528398.1 1795668..1796705(-) (pptB) [Streptococcus sp. FSL W7-1342]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGA
TCACTTTATCTTGGTTCTCCTCTTTCTGTTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGA
ATCCGTGGGCAATCATTCTTGGTTTACTTATGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAA
CCTGCGGACAAACACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACGGGGCGTGCTTTCAG
ATTTTGGGCCTTTATCCAGACCTTGATTTTTATTTTGGTAATTCCCCTCTTTTTAGCCTTGGGGCTGCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCAATGGCCATTCTTAAGTACTTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTGAGGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAGGGGATTACGTCGAGTGTTAAACGTCGTGCTTATTTGGATGGTATTCTCAGACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTACCTAAGAGCCTTCTTACGTTCTGGGGATTACTTTGCTCTTAGCCTACGTCTTTTTGCCCTA
ACGCTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTTTTGCTCTT
CCAGCTCACGGCGCTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTACACAGATTGTACTTGTGTTGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAATTT
AGCCTGATTTTGGTTGGAATTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.384

99.71

0.971

  pptB Streptococcus thermophilus LMD-9

92.442

99.71

0.922


Multiple sequence alignment