Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NSQ79_RS08275 Genome accession   NZ_CP150200
Coordinates   1796702..1797433 (-) Length   243 a.a.
NCBI ID   WP_149561190.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W7-1342     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1791702..1802433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS08250 (NSQ79_08250) - 1792770..1793951 (+) 1182 WP_049528392.1 NAD(P)/FAD-dependent oxidoreductase -
  NSQ79_RS08260 (NSQ79_08260) trmB 1794168..1794809 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NSQ79_RS08265 (NSQ79_08265) - 1794819..1795610 (-) 792 WP_002884270.1 phosphotransferase family protein -
  NSQ79_RS08270 (NSQ79_08270) pptB 1795668..1796705 (-) 1038 WP_049528398.1 ABC transporter permease Regulator
  NSQ79_RS08275 (NSQ79_08275) pptA 1796702..1797433 (-) 732 WP_149561190.1 ABC transporter ATP-binding protein Regulator
  NSQ79_RS08280 (NSQ79_08280) - 1797498..1797917 (+) 420 WP_037599159.1 HIT family protein -
  NSQ79_RS08285 (NSQ79_08285) - 1797914..1798213 (+) 300 WP_014634939.1 hypothetical protein -
  NSQ79_RS08290 (NSQ79_08290) - 1798394..1798561 (-) 168 WP_014634940.1 hypothetical protein -
  NSQ79_RS08295 (NSQ79_08295) - 1799137..1799745 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  NSQ79_RS08300 (NSQ79_08300) - 1799763..1799888 (-) 126 WP_002884447.1 hypothetical protein -
  NSQ79_RS08305 (NSQ79_08305) - 1800324..1802429 (-) 2106 WP_339313521.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26767.07 Da        Isoelectric Point: 4.4799

>NTDB_id=966117 NSQ79_RS08275 WP_149561190.1 1796702..1797433(-) (pptA) [Streptococcus sp. FSL W7-1342]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDSASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVGPSLLIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQIFGDDSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=966117 NSQ79_RS08275 WP_149561190.1 1796702..1797433(-) (pptA) [Streptococcus sp. FSL W7-1342]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACCTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACCATTCAGCAAGATTCAGCTAGCTATCGTCAGAAGATTGGTTACATCCCT
GAAACCCCAAGCCTCTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTTGGTCCAAGTCTTCTCATTGTTGATGAGCCCTTC
CTAGGTTTGGATCCCTTGGCGATTTCGGACTTGATTGAGCTTTTAGCTGAGGAAAAAGCTAAGGGCAAGGCAATTCTCAT
GTCTACACACGTTTTGGATTCGGCTGAGAAAATGTGTGACCGTTTTGTCATCTTACATCACGGTCAAGTCTTAGCACAGG
GGACTCTCGAGGAGCTCCGTCAGATTTTTGGCGACGATAGTGCTAGTCTTAACGATATCTACATGCAGTTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

97.942

100

0.979
  pptA Streptococcus thermophilus LMD-9

95.885

100

0.959

Multiple sequence alignment