Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NST06_RS17330 Genome accession   NZ_CP150197
Coordinates   3305935..3306624 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL P4-0322     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300935..3311624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST06_RS17295 (NST06_17295) - 3301015..3301497 (-) 483 WP_339240366.1 flagellar protein FlgN -
  NST06_RS17300 (NST06_17300) flgM 3301516..3301779 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST06_RS17305 (NST06_17305) - 3301859..3302278 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  NST06_RS17310 (NST06_17310) comFC 3302335..3302991 (-) 657 WP_241218534.1 ComF family protein Machinery gene
  NST06_RS17315 (NST06_17315) - 3303018..3303311 (-) 294 WP_025093967.1 competence protein ComFB -
  NST06_RS17320 (NST06_17320) comFA 3303360..3304757 (-) 1398 WP_276507389.1 DEAD/DEAH box helicase Machinery gene
  NST06_RS17325 (NST06_17325) - 3304878..3305720 (-) 843 WP_024423625.1 DegV family protein -
  NST06_RS17330 (NST06_17330) degU 3305935..3306624 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NST06_RS17335 (NST06_17335) degS 3306689..3307864 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NST06_RS17340 (NST06_17340) - 3308085..3308753 (+) 669 WP_012011434.1 YigZ family protein -
  NST06_RS17345 (NST06_17345) - 3308738..3309829 (+) 1092 WP_024423626.1 LCP family protein -
  NST06_RS17350 (NST06_17350) - 3309865..3310932 (-) 1068 WP_024423627.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=966000 NST06_RS17330 WP_008348273.1 3305935..3306624(-) (degU) [Bacillus sp. FSL P4-0322]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=966000 NST06_RS17330 WP_008348273.1 3305935..3306624(-) (degU) [Bacillus sp. FSL P4-0322]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment