Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NST06_RS17320 Genome accession   NZ_CP150197
Coordinates   3303360..3304757 (-) Length   465 a.a.
NCBI ID   WP_276507389.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0322     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298360..3309757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST06_RS17285 (NST06_17285) flgL 3298561..3299469 (-) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  NST06_RS17290 (NST06_17290) flgK 3299479..3300999 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  NST06_RS17295 (NST06_17295) - 3301015..3301497 (-) 483 WP_339240366.1 flagellar protein FlgN -
  NST06_RS17300 (NST06_17300) flgM 3301516..3301779 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST06_RS17305 (NST06_17305) - 3301859..3302278 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  NST06_RS17310 (NST06_17310) comFC 3302335..3302991 (-) 657 WP_241218534.1 ComF family protein Machinery gene
  NST06_RS17315 (NST06_17315) - 3303018..3303311 (-) 294 WP_025093967.1 competence protein ComFB -
  NST06_RS17320 (NST06_17320) comFA 3303360..3304757 (-) 1398 WP_276507389.1 DEAD/DEAH box helicase Machinery gene
  NST06_RS17325 (NST06_17325) - 3304878..3305720 (-) 843 WP_024423625.1 DegV family protein -
  NST06_RS17330 (NST06_17330) degU 3305935..3306624 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NST06_RS17335 (NST06_17335) degS 3306689..3307864 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NST06_RS17340 (NST06_17340) - 3308085..3308753 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53341.31 Da        Isoelectric Point: 9.9597

>NTDB_id=965999 NST06_RS17320 WP_276507389.1 3303360..3304757(-) (comFA) [Bacillus sp. FSL P4-0322]
MNMHKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETCRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMRVCIATPRTDVVLELEPRLRKAFQEVTITVLYGGSSQRFQITPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNRGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEQPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMH
RHIANKRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=965999 NST06_RS17320 WP_276507389.1 3303360..3304757(-) (comFA) [Bacillus sp. FSL P4-0322]
TTGAATATGCACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGCTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
TCGAGCCGAATTAACATGGCAGGGAGAGTTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGGGTCTGTATTGCGACACCTAGAACAGATGTAGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGAGGTGACAATTACCGTACTTTACGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAATTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCGTAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAT
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAATGTGGAGGGGGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGGCGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512
  comFA/cflA Streptococcus pneumoniae Rx1

38.095

94.839

0.361
  comFA/cflA Streptococcus pneumoniae D39

38.095

94.839

0.361
  comFA/cflA Streptococcus pneumoniae R6

38.095

94.839

0.361

Multiple sequence alignment