Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   AABJ90_RS06075 Genome accession   NZ_AP028964
Coordinates   1189412..1190416 (+) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1184412..1195416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS06050 (BsubNA05_11630) murC 1185106..1186404 (+) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -
  AABJ90_RS06055 (BsubNA05_11640) ytxG 1186566..1186988 (+) 423 WP_042975680.1 DUF948 domain-containing protein -
  AABJ90_RS06060 (BsubNA05_11650) ytxH 1187019..1187474 (+) 456 WP_029318257.1 YtxH domain-containing protein -
  AABJ90_RS06065 (BsubNA05_11660) ytxJ 1187498..1187824 (+) 327 WP_029318256.1 bacillithiol system redox-active protein YtxJ -
  AABJ90_RS06070 (BsubNA05_11670) aroX 1188060..1189136 (+) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  AABJ90_RS06075 (BsubNA05_11680) ccpA 1189412..1190416 (+) 1005 WP_003229285.1 catabolite control protein A Regulator
  AABJ90_RS06080 (BsubNA05_11690) motP 1190479..1191297 (+) 819 WP_014477672.1 flagellar motor protein MotP -
  AABJ90_RS06085 (BsubNA05_11700) motS 1191287..1192015 (+) 729 WP_064911652.1 flagellar motor protein MotS -
  AABJ90_RS06090 (BsubNA05_11710) acuC 1192026..1193189 (-) 1164 WP_015251447.1 acetoin utilization protein AcuC -
  AABJ90_RS06095 (BsubNA05_11720) acuB 1193186..1193830 (-) 645 WP_338382549.1 acetoin utilization AcuB family protein -
  AABJ90_RS06100 (BsubNA05_11730) acuA 1193857..1194489 (-) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=96595 AABJ90_RS06075 WP_003229285.1 1189412..1190416(+) (ccpA) [Bacillus subtilis strain NA05 = NBRC 116153]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=96595 AABJ90_RS06075 WP_003229285.1 1189412..1190416(+) (ccpA) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACTGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTTATGGTTCGTCCGCAGCTGTCAACAGTTGTTCAGC
CGACATACGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503