Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NST56_RS20090 Genome accession   NZ_CP150195
Coordinates   3843610..3843729 (+) Length   39 a.a.
NCBI ID   WP_010332289.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838610..3848729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS20070 (NST56_20070) - 3838797..3839498 (+) 702 WP_339178730.1 bacteriocin biosynthesis protein AlbG -
  NST56_RS20075 (NST56_20075) - 3839505..3840860 (-) 1356 WP_339178732.1 YncE family protein -
  NST56_RS20080 (NST56_20080) - 3840901..3842253 (-) 1353 WP_339178734.1 YncE family protein -
  NST56_RS20085 (NST56_20085) rapF 3842481..3843626 (+) 1146 WP_010332288.1 tetratricopeptide repeat protein Regulator
  NST56_RS20090 (NST56_20090) phrF 3843610..3843729 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NST56_RS20095 (NST56_20095) speB 3843864..3844736 (-) 873 WP_268446831.1 agmatinase -
  NST56_RS20100 (NST56_20100) speE 3844797..3845627 (-) 831 WP_229148621.1 spermidine synthase -
  NST56_RS20105 (NST56_20105) - 3845828..3847903 (+) 2076 WP_168749009.1 transglycosylase domain-containing protein -
  NST56_RS20110 (NST56_20110) - 3847936..3848358 (-) 423 WP_339178743.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.08 Da        Isoelectric Point: 10.4997

>NTDB_id=965883 NST56_RS20090 WP_010332289.1 3843610..3843729(+) (phrF) [Bacillus sp. FSL R5-0560]
MKLKSKILLSCLALSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=965883 NST56_RS20090 WP_010332289.1 3843610..3843729(+) (phrF) [Bacillus sp. FSL R5-0560]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTAAGCACAGTGTTTGTCGCAACAAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

85.185

69.231

0.59
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment