Detailed information NTG0965882

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NST56_RS20085
• Genome accession: NZ_CP150195
• Coordinates: 3842481..3843626 (+)
• Length: 381 a.a.
• NCBI ID: WP_010332288.1
• Uniprot ID: -
• Organism: Bacillus sp. FSL R5-0560
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3837481..3848626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NST56_RS20065 (NST56_20065)	-	3837523..3838800 (+)	1278	WP_339178728.1	pitrilysin family protein	-
NST56_RS20070 (NST56_20070)	-	3838797..3839498 (+)	702	WP_339178730.1	bacteriocin biosynthesis protein AlbG	-
NST56_RS20075 (NST56_20075)	-	3839505..3840860 (-)	1356	WP_339178732.1	YncE family protein	-
NST56_RS20080 (NST56_20080)	-	3840901..3842253 (-)	1353	WP_339178734.1	YncE family protein	-
NST56_RS20085 (NST56_20085)	rapF	3842481..3843626 (+)	1146	WP_010332288.1	tetratricopeptide repeat protein	Regulator
NST56_RS20090 (NST56_20090)	phrF	3843610..3843729 (+)	120	WP_010332289.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
NST56_RS20095 (NST56_20095)	speB	3843864..3844736 (-)	873	WP_268446831.1	agmatinase	-
NST56_RS20100 (NST56_20100)	speE	3844797..3845627 (-)	831	WP_229148621.1	spermidine synthase	-
NST56_RS20105 (NST56_20105)	-	3845828..3847903 (+)	2076	WP_168749009.1	transglycosylase domain-containing protein	-
NST56_RS20110 (NST56_20110)	-	3847936..3848358 (-)	423	WP_339178743.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45602.14 Da
• Isoelectric Point: 5.3790

>NTDB_id=965882 NST56_RS20085 WP_010332288.1 3842481..3843626(+) (rapF) [Bacillus sp. FSL R5-0560]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYTMAESEKQPQLMGRTLYNIGLCKNSQEQYES
AITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYLSGPDEEAI
QTFFDFLESKMMYADLEDFALDVAKYYHGRENFQKASAYFLKVEQVRQLIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=965882 NST56_RS20085 WP_010332288.1 3842481..3843626(+) (rapF) [Bacillus sp. FSL R5-0560]
GTGACAAGTGTTATATCTTCTTCTTCTGTGGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACC
GGATGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCTCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGAAATTGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGATTATTACTTTAATTTTTTCAG
GGGCATGTACGAACTGGACCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTG
TAAAGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCC
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGCCATTCTTT
GTTTGCTACCAACTTCTTAGATCTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCTGAAT
CCGAAAAACAGCCCCAATTAATGGGAAGAACGCTGTACAACATTGGGCTTTGCAAAAACAGCCAAGAGCAGTATGAGTCA
GCAATCACATATTTCAAAAGAGCCATATCCGTTTTTGAAGAAGCTAACATTCTTCCTTCTCTGCCCCAAGCTTATTTTTT
GATTACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTATTCTAAAG
AGGCCGGAGATATCATTTACTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCTGGCCCGGATGAAGAGGCAATT
CAAACATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTA
TCATGGACGTGAAAATTTTCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACAAGTAAGACAGCTTATTCAAGGAGGAG
TGAAATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	93.176	100	0.932
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572