Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NYE80_RS26970 Genome accession   NZ_CP150192
Coordinates   5995794..5996507 (-) Length   237 a.a.
NCBI ID   WP_038595627.1    Uniprot ID   A0A089IBW5
Organism   Paenibacillus sp. FSL H7-0357     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5990794..6001507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE80_RS26950 (NYE80_26950) - 5991751..5992518 (-) 768 WP_038595620.1 ABC transporter ATP-binding protein -
  NYE80_RS26955 (NYE80_26955) - 5992627..5993622 (-) 996 WP_038595622.1 sensor histidine kinase -
  NYE80_RS26960 (NYE80_26960) - 5993619..5994323 (-) 705 WP_038595624.1 response regulator transcription factor -
  NYE80_RS26965 (NYE80_26965) - 5994370..5995794 (-) 1425 WP_038595626.1 HAMP domain-containing sensor histidine kinase -
  NYE80_RS26970 (NYE80_26970) scnR 5995794..5996507 (-) 714 WP_038595627.1 response regulator transcription factor Regulator
  NYE80_RS26975 (NYE80_26975) - 5996665..5997582 (+) 918 WP_038600533.1 ABC transporter ATP-binding protein -
  NYE80_RS26980 (NYE80_26980) - 5997579..5998331 (+) 753 WP_038595630.1 ABC transporter permease -
  NYE80_RS26985 (NYE80_26985) - 5998344..5999075 (+) 732 WP_038595632.1 ABC transporter permease -
  NYE80_RS26990 (NYE80_26990) - 5999477..5999869 (-) 393 WP_038595635.1 tautomerase family protein -
  NYE80_RS26995 (NYE80_26995) - 5999907..6000779 (-) 873 WP_269322415.1 DUF561 domain-containing protein -
  NYE80_RS27000 (NYE80_27000) - 6000860..6001003 (-) 144 WP_331281739.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26861.45 Da        Isoelectric Point: 5.7677

>NTDB_id=965705 NYE80_RS26970 WP_038595627.1 5995794..5996507(-) (scnR) [Paenibacillus sp. FSL H7-0357]
MDIIKNKKVLIVDDEPKILEMIEMFLRKEGFFRIFIAGNYADALRICRMEKPDAAILDVMLPDGDGFSLLSAIRTFSDMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELILRLMAILKRAYAFNAPERLPVFRLGGQVIDLESAVVRREGTELPL
TAKEHAILIKLHENQGRIVTSDALCQAVWGDDSFGYENTLMVHVRRIREKIEEEPSKPVHLLTVRGLGYKLLVQGDR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=965705 NYE80_RS26970 WP_038595627.1 5995794..5996507(-) (scnR) [Paenibacillus sp. FSL H7-0357]
TTGGATATCATAAAAAATAAAAAAGTACTGATCGTGGATGACGAACCAAAAATCCTTGAAATGATAGAGATGTTTTTACG
TAAAGAAGGTTTTTTTCGTATTTTCATAGCCGGTAATTATGCTGATGCGTTGAGGATCTGCAGGATGGAAAAGCCGGATG
CGGCCATTCTGGATGTTATGCTGCCTGACGGAGATGGATTTTCTCTTCTTTCCGCAATCCGAACATTTTCGGACATGCCG
GTGCTGTTTCTCTCCGCGCGTGGAGAGGATGAAGACCGATTGCTTGGCCTTGGGCTGGGCGCGGATGATTATATCGTCAA
GCCTTTTCTGCCGAGAGAATTGATTTTACGGCTGATGGCCATTTTAAAGCGGGCATATGCCTTCAATGCTCCCGAGAGGC
TCCCTGTCTTCCGGCTGGGCGGGCAGGTGATAGATTTGGAAAGCGCTGTTGTGCGTAGAGAGGGCACCGAGCTTCCTCTG
ACAGCCAAAGAACACGCAATACTGATTAAACTGCATGAGAACCAAGGAAGAATCGTAACAAGCGACGCCCTATGTCAGGC
GGTATGGGGAGATGACAGCTTCGGCTATGAGAATACATTAATGGTACATGTGCGGCGAATCCGGGAAAAAATAGAAGAGG
AACCATCCAAGCCCGTGCATTTGCTTACGGTAAGAGGACTTGGTTATAAGCTGCTTGTACAGGGGGACCGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089IBW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.655

96.624

0.489
  vicR Streptococcus mutans UA159

41.126

97.468

0.401
  micA Streptococcus pneumoniae Cp1015

41.304

97.046

0.401

Multiple sequence alignment