Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   ACKFA7_RS07720 Genome accession   NZ_CP175553
Coordinates   1584144..1586192 (+) Length   682 a.a.
NCBI ID   WP_038457985.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1579144..1591192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS07690 (ACKFA7_07690) spoVM 1579788..1579868 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  ACKFA7_RS07695 (ACKFA7_07695) rpmB 1579946..1580134 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  ACKFA7_RS07700 (ACKFA7_07700) - 1580393..1580755 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  ACKFA7_RS07705 (ACKFA7_07705) - 1580771..1582438 (+) 1668 WP_038457982.1 DAK2 domain-containing protein -
  ACKFA7_RS07710 (ACKFA7_07710) sdaAB 1582581..1583243 (+) 663 WP_017417764.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACKFA7_RS07715 (ACKFA7_07715) sdaAA 1583264..1584166 (+) 903 WP_003154324.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACKFA7_RS07720 (ACKFA7_07720) recG 1584144..1586192 (+) 2049 WP_038457985.1 ATP-dependent DNA helicase RecG Machinery gene
  ACKFA7_RS07725 (ACKFA7_07725) fapR 1586299..1586865 (+) 567 WP_003154320.1 transcription factor FapR -
  ACKFA7_RS07730 (ACKFA7_07730) plsX 1586879..1587877 (+) 999 WP_007409758.1 phosphate acyltransferase PlsX -
  ACKFA7_RS07735 (ACKFA7_07735) fabD 1587896..1588849 (+) 954 WP_003154316.1 ACP S-malonyltransferase -
  ACKFA7_RS07740 (ACKFA7_07740) fabG 1588842..1589582 (+) 741 WP_038457988.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACKFA7_RS07745 (ACKFA7_07745) acpP 1589667..1589900 (+) 234 WP_003154310.1 acyl carrier protein -
  ACKFA7_RS07750 (ACKFA7_07750) rncS 1590039..1590788 (+) 750 WP_038457991.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 77895.21 Da        Isoelectric Point: 6.7634

>NTDB_id=965563 ACKFA7_RS07720 WP_038457985.1 1584144..1586192(+) (recG) [Bacillus amyloliquefaciens strain 4-9-2]
MTHHQQTSIAEIKGIGPETEKTLRELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALEHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLAAFTDSLPFSLTTAQTRVLREITAEMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=965563 ACKFA7_RS07720 WP_038457985.1 1584144..1586192(+) (recG) [Bacillus amyloliquefaciens strain 4-9-2]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCGCGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGACTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCAGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGGAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTGAGAATCCGCTACAAGCTGCCTGA
TTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTACG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCGCCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACAACCGCACAGACGCGCGTGCTTCGGGA
AATTACCGCTGAGATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTTTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTGAATATCGCGCTTTTGACGAGTTCTGTAAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGACGAAG
TGGAATTTAAAGCGCTGAGCCTTGTCATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGCCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATTCCGAGAACGTTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAACAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTTTCTGACGTTTACCGCGGGAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGATTATCT
CAGCTCCACCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCAGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCGGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGGGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAGACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCTTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCTTGGAAGGGGAGAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.589

100

0.896

  recG/mmsA Streptococcus pneumoniae R6

49.925

97.801

0.488

  recG/mmsA Streptococcus pneumoniae R36A

49.925

97.801

0.488

  recG Neisseria meningitidis strain C311

39.204

95.748

0.375