Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACKFA7_RS05005 Genome accession   NZ_CP175553
Coordinates   1024201..1024944 (+) Length   247 a.a.
NCBI ID   WP_025284506.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019201..1029944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS04970 (ACKFA7_04970) - 1019567..1019908 (+) 342 WP_003155243.1 YhaI family protein -
  ACKFA7_RS04975 (ACKFA7_04975) - 1019905..1020516 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -
  ACKFA7_RS04980 (ACKFA7_04980) - 1020696..1021052 (-) 357 WP_007409224.1 YtxH domain-containing protein -
  ACKFA7_RS04985 (ACKFA7_04985) - 1021170..1021361 (+) 192 WP_007409223.1 hypothetical protein -
  ACKFA7_RS04990 (ACKFA7_04990) - 1021419..1021937 (-) 519 WP_012117208.1 tryptophan transporter -
  ACKFA7_RS04995 (ACKFA7_04995) serC 1022058..1023137 (-) 1080 WP_408856577.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  ACKFA7_RS05000 (ACKFA7_05000) - 1023273..1023710 (-) 438 WP_007409220.1 HIT family protein -
  ACKFA7_RS05005 (ACKFA7_05005) pptA 1024201..1024944 (+) 744 WP_025284506.1 ABC transporter ATP-binding protein Regulator
  ACKFA7_RS05010 (ACKFA7_05010) - 1024937..1026163 (+) 1227 WP_007409219.1 ABC transporter permease -
  ACKFA7_RS05015 (ACKFA7_05015) - 1026206..1026910 (+) 705 WP_020955586.1 EcsC family protein -
  ACKFA7_RS05020 (ACKFA7_05020) - 1026933..1028120 (-) 1188 WP_038457493.1 M20 family metallopeptidase -
  ACKFA7_RS05025 (ACKFA7_05025) - 1028189..1029574 (-) 1386 WP_100001342.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27725.08 Da        Isoelectric Point: 5.4047

>NTDB_id=965534 ACKFA7_RS05005 WP_025284506.1 1024201..1024944(+) (pptA) [Bacillus amyloliquefaciens strain 4-9-2]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDKESYRSQFTY
IPETPVLYEELTLKEHLELTAMAYGLSKETLEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPSLYIIDE
PFLGLDPLAINALLERMDAAKKAGSSVLMSTHILATAERYCDAFIILHNGEVRASGTLEELREQFGMEDAALDDLYIELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=965534 ACKFA7_RS05005 WP_025284506.1 1024201..1024944(+) (pptA) [Bacillus amyloliquefaciens strain 4-9-2]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGTTATACGAGAAACCCGGTCTTAAAAAATGTTTCATTCACCCTTGA
GCCGAACCAGATTGTCGGACTCATCGGATTAAACGGCGCGGGCAAAAGCACGACGATCCGGCATATTATCGGATTAATGG
ACCCGCATAAAGGCTCGATCGAGCTGAACGGCAAGACGTTTTCGGAGGATAAGGAAAGCTACCGCTCGCAATTTACATAC
ATCCCAGAAACGCCGGTGCTGTATGAAGAACTGACGCTCAAGGAGCATTTGGAGCTGACGGCCATGGCGTACGGCCTTTC
CAAAGAAACGCTTGAAAAAAGGCTTCCTCCGCTTCTGAAAGAATTCAGAATGGAAAAAAGGCTGAAATGGTTTCCCGCTC
ACTTTTCCAAAGGGATGAAGCAGAAGGTCATGATCATGTGCGCGTTTCTCGCGGAGCCTTCGCTTTATATCATTGACGAG
CCGTTTCTCGGCCTTGACCCGCTTGCGATCAATGCATTGCTGGAGCGGATGGACGCCGCGAAAAAAGCCGGATCAAGCGT
GCTGATGTCAACACATATCCTGGCTACGGCAGAGCGCTACTGTGACGCTTTCATTATTTTACATAACGGCGAAGTGCGGG
CAAGCGGCACACTGGAAGAACTGAGAGAGCAGTTCGGCATGGAAGACGCAGCTCTTGATGACTTGTATATTGAACTGACG
AAGGAAGACGCCGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547

Multiple sequence alignment