Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ84_RS12170 Genome accession   NZ_CP150188
Coordinates   2532513..2532824 (-) Length   103 a.a.
NCBI ID   WP_063388095.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-3256     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2527513..2537824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ84_RS12135 (NSQ84_12135) - 2528078..2529745 (+) 1668 WP_327863172.1 SNF2-related protein -
  NSQ84_RS12140 (NSQ84_12140) - 2529797..2530594 (+) 798 WP_327874155.1 YqhG family protein -
  NSQ84_RS12145 (NSQ84_12145) - 2530685..2530864 (-) 180 WP_130156369.1 YqzE family protein -
  NSQ84_RS12150 (NSQ84_12150) comGG 2530984..2531355 (-) 372 WP_327874156.1 competence type IV pilus minor pilin ComGG -
  NSQ84_RS12155 (NSQ84_12155) comGF 2531352..2531843 (-) 492 WP_133309105.1 competence type IV pilus minor pilin ComGF -
  NSQ84_RS12160 (NSQ84_12160) - 2531773..2532099 (-) 327 WP_063388097.1 hypothetical protein -
  NSQ84_RS12165 (NSQ84_12165) comGD 2532083..2532544 (-) 462 WP_066247587.1 competence type IV pilus minor pilin ComGD -
  NSQ84_RS12170 (NSQ84_12170) comGC 2532513..2532824 (-) 312 WP_063388095.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ84_RS12175 (NSQ84_12175) comGB 2532829..2533860 (-) 1032 WP_339211940.1 competence type IV pilus assembly protein ComGB -
  NSQ84_RS12180 (NSQ84_12180) comGA 2533853..2534920 (-) 1068 WP_066247583.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ84_RS12185 (NSQ84_12185) - 2535237..2535482 (+) 246 WP_063388092.1 DUF2626 domain-containing protein -
  NSQ84_RS12190 (NSQ84_12190) - 2535537..2536181 (-) 645 WP_327874108.1 MBL fold metallo-hydrolase -
  NSQ84_RS12195 (NSQ84_12195) - 2536427..2536600 (+) 174 WP_065095533.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11361.25 Da        Isoelectric Point: 5.0078

>NTDB_id=965533 NSQ84_RS12170 WP_063388095.1 2532513..2532824(-) (comGC) [Aeribacillus sp. FSL K6-3256]
MKIVKNEHGFTLVEMLVVLLVISILLIITIPNVMAHNKNIQNKGCEGLIDMVQGQVVAYEMEFHQTPTINDLITKGYLPN
NSGKCPNGDEIEIDANGNVIKSN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=965533 NSQ84_RS12170 WP_063388095.1 2532513..2532824(-) (comGC) [Aeribacillus sp. FSL K6-3256]
ATGAAAATAGTGAAAAATGAACATGGATTTACATTGGTGGAAATGCTGGTTGTACTGTTAGTGATCTCGATTTTGCTTAT
TATAACGATTCCGAATGTTATGGCTCATAATAAAAATATTCAAAATAAAGGGTGCGAAGGTTTAATTGATATGGTGCAGG
GTCAAGTCGTCGCATATGAAATGGAGTTTCATCAAACACCAACAATTAATGATTTAATCACTAAAGGGTACTTGCCGAAT
AATTCTGGAAAATGTCCAAATGGTGATGAGATTGAAATTGATGCAAATGGAAACGTCATTAAGAGCAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

57.471

84.466

0.485
  comGC Staphylococcus aureus MW2

39.604

98.058

0.388
  comGC Staphylococcus aureus N315

39.604

98.058

0.388

Multiple sequence alignment