Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ42_RS18520 Genome accession   NZ_CP150184
Coordinates   3552464..3553153 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL W8-0812     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3547464..3558153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS18485 (NSQ42_18485) flgN 3547644..3548126 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NSQ42_RS18490 (NSQ42_18490) flgM 3548142..3548408 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ42_RS18495 (NSQ42_18495) - 3548489..3548908 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NSQ42_RS18500 (NSQ42_18500) comFC 3548982..3549704 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  NSQ42_RS18505 (NSQ42_18505) comFB 3549668..3549964 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ42_RS18510 (NSQ42_18510) comFA 3550024..3551415 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  NSQ42_RS18515 (NSQ42_18515) - 3551521..3552366 (-) 846 WP_003244125.1 DegV family protein -
  NSQ42_RS18520 (NSQ42_18520) degU 3552464..3553153 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ42_RS18525 (NSQ42_18525) degS 3553236..3554393 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ42_RS18530 (NSQ42_18530) - 3554610..3555263 (+) 654 WP_003227979.1 YigZ family protein -
  NSQ42_RS18535 (NSQ42_18535) tagV 3555263..3556438 (+) 1176 WP_088467417.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NSQ42_RS18540 (NSQ42_18540) - 3556511..3557587 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=965390 NSQ42_RS18520 WP_003219701.1 3552464..3553153(-) (degU) [Bacillus sp. FSL W8-0812]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=965390 NSQ42_RS18520 WP_003219701.1 3552464..3553153(-) (degU) [Bacillus sp. FSL W8-0812]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment