Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ42_RS18510 Genome accession   NZ_CP150184
Coordinates   3550024..3551415 (-) Length   463 a.a.
NCBI ID   WP_038427948.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0812     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3545024..3556415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS18475 (NSQ42_18475) flgL 3545195..3546091 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NSQ42_RS18480 (NSQ42_18480) flgK 3546102..3547625 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  NSQ42_RS18485 (NSQ42_18485) flgN 3547644..3548126 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NSQ42_RS18490 (NSQ42_18490) flgM 3548142..3548408 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ42_RS18495 (NSQ42_18495) - 3548489..3548908 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NSQ42_RS18500 (NSQ42_18500) comFC 3548982..3549704 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  NSQ42_RS18505 (NSQ42_18505) comFB 3549668..3549964 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ42_RS18510 (NSQ42_18510) comFA 3550024..3551415 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  NSQ42_RS18515 (NSQ42_18515) - 3551521..3552366 (-) 846 WP_003244125.1 DegV family protein -
  NSQ42_RS18520 (NSQ42_18520) degU 3552464..3553153 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ42_RS18525 (NSQ42_18525) degS 3553236..3554393 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ42_RS18530 (NSQ42_18530) - 3554610..3555263 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52577.64 Da        Isoelectric Point: 10.0393

>NTDB_id=965389 NSQ42_RS18510 WP_038427948.1 3550024..3551415(-) (comFA) [Bacillus sp. FSL W8-0812]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=965389 NSQ42_RS18510 WP_038427948.1 3550024..3551415(-) (comFA) [Bacillus sp. FSL W8-0812]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.568

100

0.996

Multiple sequence alignment