Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NSQ42_RS18500 Genome accession   NZ_CP150184
Coordinates   3548982..3549704 (-) Length   240 a.a.
NCBI ID   WP_038427947.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0812     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3543982..3554704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS18465 (NSQ42_18465) fliW 3544121..3544552 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NSQ42_RS18470 (NSQ42_18470) - 3544573..3545148 (-) 576 WP_015384781.1 DUF6470 family protein -
  NSQ42_RS18475 (NSQ42_18475) flgL 3545195..3546091 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NSQ42_RS18480 (NSQ42_18480) flgK 3546102..3547625 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  NSQ42_RS18485 (NSQ42_18485) flgN 3547644..3548126 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NSQ42_RS18490 (NSQ42_18490) flgM 3548142..3548408 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ42_RS18495 (NSQ42_18495) - 3548489..3548908 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NSQ42_RS18500 (NSQ42_18500) comFC 3548982..3549704 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  NSQ42_RS18505 (NSQ42_18505) comFB 3549668..3549964 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ42_RS18510 (NSQ42_18510) comFA 3550024..3551415 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  NSQ42_RS18515 (NSQ42_18515) - 3551521..3552366 (-) 846 WP_003244125.1 DegV family protein -
  NSQ42_RS18520 (NSQ42_18520) degU 3552464..3553153 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ42_RS18525 (NSQ42_18525) degS 3553236..3554393 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27424.72 Da        Isoelectric Point: 9.4911

>NTDB_id=965388 NSQ42_RS18500 WP_038427947.1 3548982..3549704(-) (comFC) [Bacillus sp. FSL W8-0812]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKQFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=965388 NSQ42_RS18500 WP_038427947.1 3548982..3549704(-) (comFC) [Bacillus sp. FSL W8-0812]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCAGTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment