Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSQ42_RS12450 Genome accession   NZ_CP150184
Coordinates   2415979..2416314 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. FSL W8-0812     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2410979..2421314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS12430 (NSQ42_12430) gcvT 2411571..2412659 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  NSQ42_RS12435 (NSQ42_12435) - 2413101..2414774 (+) 1674 WP_029726726.1 SNF2-related protein -
  NSQ42_RS12440 (NSQ42_12440) - 2414795..2415589 (+) 795 WP_003230200.1 YqhG family protein -
  NSQ42_RS12445 (NSQ42_12445) sinI 2415772..2415945 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSQ42_RS12450 (NSQ42_12450) sinR 2415979..2416314 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSQ42_RS12455 (NSQ42_12455) tasA 2416407..2417192 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  NSQ42_RS12460 (NSQ42_12460) - 2417256..2417828 (-) 573 WP_003246088.1 signal peptidase I -
  NSQ42_RS12465 (NSQ42_12465) tapA 2417812..2418573 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ42_RS12470 (NSQ42_12470) - 2418843..2419169 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSQ42_RS12475 (NSQ42_12475) - 2419211..2419390 (-) 180 WP_029726723.1 YqzE family protein -
  NSQ42_RS12480 (NSQ42_12480) comGG 2419462..2419836 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  NSQ42_RS12485 (NSQ42_12485) comGF 2419837..2420220 (-) 384 WP_195727813.1 competence type IV pilus minor pilin ComGF Machinery gene
  NSQ42_RS12490 (NSQ42_12490) comGE 2420246..2420593 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  NSQ42_RS12495 (NSQ42_12495) comGD 2420577..2421008 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  NSQ42_RS12500 (NSQ42_12500) comGC 2420998..2421294 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=965363 NSQ42_RS12450 WP_003226345.1 2415979..2416314(+) (sinR) [Bacillus sp. FSL W8-0812]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=965363 NSQ42_RS12450 WP_003226345.1 2415979..2416314(+) (sinR) [Bacillus sp. FSL W8-0812]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment