Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NYE40_RS03780 Genome accession   NZ_CP150181
Coordinates   849377..851149 (+) Length   590 a.a.
NCBI ID   WP_153782774.1    Uniprot ID   A0A5Q2NJD3
Organism   Paenibacillus sp. FSL W8-1187     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 844377..856149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE40_RS03770 (NYE40_03770) - 845260..847545 (+) 2286 WP_028600064.1 discoidin domain-containing protein -
  NYE40_RS03775 (NYE40_03775) - 848668..849072 (+) 405 WP_028600065.1 MarR family transcriptional regulator -
  NYE40_RS03780 (NYE40_03780) rcrP 849377..851149 (+) 1773 WP_153782774.1 ABC transporter ATP-binding protein Regulator
  NYE40_RS03785 (NYE40_03785) rcrQ 851205..852998 (+) 1794 WP_228551798.1 ABC transporter ATP-binding protein Regulator
  NYE40_RS03790 (NYE40_03790) - 853138..853443 (-) 306 WP_052333492.1 hypothetical protein -
  NYE40_RS03795 (NYE40_03795) - 853701..854360 (+) 660 WP_153782776.1 FusB/FusC family EF-G-binding protein -
  NYE40_RS03800 (NYE40_03800) - 854512..854985 (+) 474 WP_028600069.1 GNAT family N-acetyltransferase -
  NYE40_RS03805 (NYE40_03805) - 855010..855567 (+) 558 WP_028600070.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64278.45 Da        Isoelectric Point: 8.3282

>NTDB_id=965240 NYE40_RS03780 WP_153782774.1 849377..851149(+) (rcrP) [Paenibacillus sp. FSL W8-1187]
MLKLFKYLTKGEWGFVLYSLIFIIVQVWLDLRLPDYMAEITTLIQTEGTRAADLMEPGTYMLLCAVGSVLTSVIVGWFAA
KVAAGLAMRLRGMVFDRTLSFSHQEINGFSTASLITRSTNDVTQVQMIVAMGLQVMLKAPILAVWAIAKISGKSWEWTAA
TGAAVVALIVMLSVIIVFAIPKFRIIQGLTDNLNRITRENLTGLRVIRAYNAAAYQEAKFDRANRELTGTNLFASRLMAI
IGPGMTIIMSGLSVSIYAIGAYLIQDAPGTDRIGIFSNMVVFTSYAMQVVMAFMMVSMIFIMAPRAAISAKRILEVLNTE
AAIKDGVETKGSGEGGIEFRNVSFKYPGAEEPVLRDISFKARKGETVAIIGSTGSGKTSVLNLVPRFYDVAAGEVLVDGI
DVRRYSQHALRAKLGYVSQRAVLFSGTVAANVAYGSAEPGREAEEGVRRAVAIAQGTDFVESMEGQYEGRIAQGGDNVSG
GQKQRLSIARAVYRRPDIYLFDDSFSALDYRTDRELRAALRRETGGATTLIVAQRIGTIKDADRILVLEDGRIVGSGTHE
ELLQDCPTYQEIALSQLSKEELAHGTIESA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=965240 NYE40_RS03780 WP_153782774.1 849377..851149(+) (rcrP) [Paenibacillus sp. FSL W8-1187]
ATGCTGAAGCTGTTCAAGTATCTGACGAAGGGCGAGTGGGGGTTCGTCCTGTACAGCCTGATCTTCATCATCGTCCAGGT
GTGGCTTGACTTGCGGCTGCCGGATTACATGGCCGAGATCACGACGCTCATCCAGACGGAGGGCACGCGCGCGGCCGATC
TGATGGAGCCGGGCACCTACATGCTGCTGTGCGCCGTCGGCAGCGTGCTGACATCGGTCATCGTCGGCTGGTTCGCCGCC
AAGGTGGCGGCGGGGCTGGCGATGCGGCTGCGCGGCATGGTGTTCGATCGGACGCTGTCGTTCTCCCATCAGGAGATCAA
CGGCTTCTCGACGGCCAGCCTCATCACCCGTTCGACCAATGACGTGACGCAGGTTCAGATGATCGTGGCGATGGGGCTGC
AGGTGATGCTCAAGGCGCCGATCCTCGCGGTCTGGGCGATCGCCAAAATTTCCGGAAAGAGCTGGGAGTGGACGGCGGCG
ACCGGCGCCGCCGTCGTCGCGCTCATCGTCATGCTGAGCGTCATCATCGTGTTCGCGATCCCCAAGTTCCGCATCATCCA
GGGGCTGACCGACAACCTGAACCGCATCACCCGCGAGAACCTGACCGGCCTGCGCGTCATCCGCGCTTACAACGCGGCGG
CGTACCAGGAGGCCAAGTTCGACCGGGCGAACCGCGAGCTGACCGGCACGAACCTGTTCGCCAGCCGGCTGATGGCGATC
ATCGGTCCCGGCATGACGATCATCATGTCCGGCCTCAGCGTCTCGATCTACGCGATCGGCGCTTACCTGATCCAGGATGC
GCCGGGCACGGATCGCATCGGGATCTTTTCCAATATGGTCGTGTTCACCTCGTATGCGATGCAGGTCGTGATGGCGTTCA
TGATGGTCAGCATGATCTTCATCATGGCGCCGCGCGCGGCCATCTCGGCCAAGCGGATTCTGGAGGTGCTGAATACGGAA
GCCGCGATCAAGGACGGCGTCGAGACGAAGGGCAGCGGCGAGGGCGGCATCGAGTTCCGGAACGTCAGCTTCAAGTATCC
GGGCGCCGAGGAGCCGGTGCTGCGGGACATCAGCTTCAAGGCGCGCAAGGGCGAGACGGTGGCGATCATCGGCTCGACCG
GCAGCGGCAAGACGAGCGTGCTGAACCTGGTTCCGCGCTTCTATGACGTCGCCGCAGGCGAGGTGCTCGTCGACGGCATC
GACGTGCGCCGCTACAGCCAGCACGCGCTGCGCGCCAAGCTCGGCTACGTCTCCCAGCGGGCGGTGCTGTTCAGCGGCAC
CGTCGCCGCCAACGTCGCCTACGGCAGCGCCGAGCCGGGGCGCGAAGCCGAGGAGGGCGTCCGGCGGGCGGTCGCGATCG
CGCAAGGAACCGATTTTGTCGAGTCCATGGAAGGGCAGTACGAGGGCCGCATCGCCCAGGGCGGGGACAACGTCTCCGGC
GGCCAGAAGCAGCGGCTGTCGATCGCGCGCGCCGTCTACCGGCGGCCGGACATCTACCTGTTCGACGACTCGTTCTCGGC
GCTCGACTACCGCACCGACCGCGAGCTGCGCGCCGCGCTGCGCCGGGAGACCGGCGGCGCGACGACGCTCATCGTCGCCC
AGCGCATCGGCACGATCAAGGACGCCGACCGCATCCTCGTGCTCGAGGACGGGCGCATCGTCGGCAGCGGCACGCATGAG
GAGCTGCTGCAGGACTGCCCGACGTACCAGGAGATCGCCCTTTCCCAGCTATCCAAGGAGGAACTCGCCCATGGCACGAT
CGAATCAGCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(354-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2NJD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.254

100

0.531

Multiple sequence alignment