Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACJSOD_RS04850 Genome accession   NZ_CP174508
Coordinates   1049660..1050184 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain KS1-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1044660..1055184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJSOD_RS04835 (ACJSOD_04835) aroB 1045776..1046882 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  ACJSOD_RS04840 (ACJSOD_04840) aroK 1046932..1047450 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACJSOD_RS04845 (ACJSOD_04845) pilQ 1047462..1049606 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  ACJSOD_RS04850 (ACJSOD_04850) comL/pilP 1049660..1050184 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACJSOD_RS04855 (ACJSOD_04855) pilO 1050181..1050804 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJSOD_RS04860 (ACJSOD_04860) pilN 1050801..1051397 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACJSOD_RS04865 (ACJSOD_04865) pilM 1051397..1052461 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACJSOD_RS04870 (ACJSOD_04870) - 1052646..1055117 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=965238 ACJSOD_RS04850 WP_003095836.1 1049660..1050184(-) (comL/pilP) [Pseudomonas aeruginosa strain KS1-2]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=965238 ACJSOD_RS04850 WP_003095836.1 1049660..1050184(-) (comL/pilP) [Pseudomonas aeruginosa strain KS1-2]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362