Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NYE40_RS03785 Genome accession   NZ_CP150181
Coordinates   851205..852998 (+) Length   597 a.a.
NCBI ID   WP_228551798.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-1187     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 846205..857998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE40_RS03775 (NYE40_03775) - 848668..849072 (+) 405 WP_028600065.1 MarR family transcriptional regulator -
  NYE40_RS03780 (NYE40_03780) rcrP 849377..851149 (+) 1773 WP_153782774.1 ABC transporter ATP-binding protein Regulator
  NYE40_RS03785 (NYE40_03785) rcrQ 851205..852998 (+) 1794 WP_228551798.1 ABC transporter ATP-binding protein Regulator
  NYE40_RS03790 (NYE40_03790) - 853138..853443 (-) 306 WP_052333492.1 hypothetical protein -
  NYE40_RS03795 (NYE40_03795) - 853701..854360 (+) 660 WP_153782776.1 FusB/FusC family EF-G-binding protein -
  NYE40_RS03800 (NYE40_03800) - 854512..854985 (+) 474 WP_028600069.1 GNAT family N-acetyltransferase -
  NYE40_RS03805 (NYE40_03805) - 855010..855567 (+) 558 WP_028600070.1 cysteine hydrolase family protein -
  NYE40_RS03810 (NYE40_03810) - 855652..856881 (-) 1230 WP_052333493.1 ATP-binding protein -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65216.47 Da        Isoelectric Point: 5.7067

>NTDB_id=965241 NYE40_RS03785 WP_228551798.1 851205..852998(+) (rcrQ) [Paenibacillus sp. FSL W8-1187]
MGGGPMGGGMMPGDKAKDFRATLRKLAAYCRKYMPAIALALVLALAGSALNVIGPDLLRNITDKIQEGIRGTIDIDAINR
IVLLLAALYGAGLIFNYAQGFIMATVTQRITNKMRTEISAKINRMPLRYFDSTSYGNVLSRVTNDIDMIGQTLNNSLGML
VSSVALFVGALVMMVYTNWILAITAVVSTIVGFALMSVIMKHSQRWFVAQQEVLGRLNGHIEETYSGHAVVKAYNAEEEA
KAAFHDLNGKLYGSAWKSQFMSGLMMPIMGFVGNLGYVAICVVGAMLVTSNTISIGTIVAFMIYIRLFTQPLGQIAQAAT
NLQATAAASERVFEFLEEEELADESAKTTKLAQVKGEVEFRHARFGYTADKDVIKDFSMKAEAGQKIAIVGPTGAGKTTL
VNLLMRFYELSGGEILIDGVPIDRMTREDVHDLFSMVLQDTWLFEGTIRDNIAFARPDVTDAQIEEACRAVGLDHFIRTL
PDGYDTVLGDRASLSAGQKQLLTIARAMIDDAPLLILDEATSSVDTRTELLIQRAMDRLSAGKTSFVIAHRLSTIKNADR
ILVMKDGDILETGTHDELLARGGFYAELYNSQFEQVS

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=965241 NYE40_RS03785 WP_228551798.1 851205..852998(+) (rcrQ) [Paenibacillus sp. FSL W8-1187]
ATGGGGGGCGGACCGATGGGCGGAGGCATGATGCCCGGCGACAAGGCGAAGGACTTCCGCGCCACGCTCCGCAAGCTGGC
CGCCTACTGCCGCAAGTACATGCCGGCCATCGCGCTGGCGCTCGTGCTGGCGCTGGCCGGATCCGCGCTGAACGTCATCG
GGCCGGACCTGCTGCGCAACATTACCGACAAGATCCAGGAGGGCATCCGCGGGACGATCGACATCGACGCGATCAACCGG
ATCGTGCTGCTGCTCGCGGCGCTGTACGGCGCCGGCCTGATCTTCAACTACGCGCAGGGCTTCATCATGGCGACGGTCAC
CCAGCGCATCACGAACAAGATGCGGACCGAGATCTCCGCCAAGATCAACCGCATGCCGCTGCGCTACTTCGACTCGACGA
GCTACGGCAACGTACTGAGCCGCGTCACGAACGACATCGACATGATCGGGCAGACGCTCAACAACAGCCTCGGCATGCTC
GTCTCGTCCGTCGCCCTGTTCGTCGGCGCGCTCGTCATGATGGTCTATACGAACTGGATCCTCGCCATCACGGCCGTCGT
CTCGACGATCGTCGGCTTCGCGCTCATGAGCGTCATCATGAAGCATTCGCAGCGCTGGTTCGTCGCCCAGCAGGAGGTGC
TCGGGCGGCTGAACGGCCATATCGAGGAGACGTACTCCGGCCACGCGGTCGTCAAGGCGTACAACGCCGAGGAAGAGGCC
AAGGCCGCCTTCCACGATCTGAACGGCAAGCTGTACGGCAGCGCCTGGAAATCGCAGTTCATGTCCGGCCTCATGATGCC
GATCATGGGCTTCGTCGGCAACCTCGGCTACGTCGCGATCTGCGTCGTCGGCGCGATGCTCGTCACCTCGAATACGATCA
GCATCGGCACGATCGTCGCCTTCATGATCTACATCCGGCTGTTCACGCAGCCGCTCGGCCAGATCGCCCAGGCGGCGACG
AACCTGCAGGCGACGGCCGCCGCGAGCGAGCGCGTGTTCGAGTTCCTCGAGGAGGAGGAGCTGGCGGACGAGAGCGCCAA
GACGACGAAGCTGGCGCAGGTCAAGGGCGAGGTCGAGTTCCGCCATGCGCGCTTCGGCTACACGGCCGACAAGGACGTCA
TCAAGGACTTCTCGATGAAGGCGGAGGCCGGGCAGAAGATCGCCATCGTCGGCCCGACCGGGGCCGGCAAGACGACGCTC
GTCAACCTGCTCATGCGGTTCTATGAGCTGAGCGGAGGCGAGATCCTCATCGACGGCGTGCCGATCGACCGGATGACGCG
GGAGGACGTGCATGACCTGTTCAGCATGGTGCTGCAGGACACCTGGCTGTTCGAGGGCACGATCCGCGACAACATCGCCT
TCGCCCGTCCGGACGTCACCGACGCGCAGATCGAGGAGGCTTGCCGCGCCGTCGGCCTGGACCACTTCATCCGCACGCTG
CCGGACGGCTACGACACTGTGCTGGGCGACCGCGCCAGCCTGTCGGCCGGACAGAAGCAGCTGCTCACGATCGCGCGGGC
GATGATCGACGACGCGCCGCTGCTCATCCTCGACGAGGCGACGAGCTCCGTCGACACGCGCACCGAGCTGCTCATCCAGC
GGGCGATGGACCGGCTCTCCGCCGGCAAGACGTCGTTCGTCATCGCCCACCGGCTGTCCACGATCAAAAACGCCGACCGC
ATCCTCGTCATGAAGGACGGCGACATCCTCGAGACCGGCACGCATGACGAGCTGCTGGCGCGCGGCGGCTTCTACGCCGA
GCTGTACAACAGCCAGTTCGAGCAGGTTTCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(375-522)

ABC transporter transmembrane region (ABC_membrane)

(38-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.25

96.482

0.543

Multiple sequence alignment