Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | NSQ23_RS05310 | Genome accession | NZ_CP150179 |
| Coordinates | 1007929..1008999 (+) | Length | 356 a.a. |
| NCBI ID | WP_339173529.1 | Uniprot ID | - |
| Organism | Anoxybacillus sp. FSL W8-1294 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1002929..1013999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ23_RS05280 (NSQ23_05280) | - | 1003445..1004359 (+) | 915 | WP_004889533.1 | M14 family metallocarboxypeptidase | - |
| NSQ23_RS05285 (NSQ23_05285) | - | 1004386..1004571 (-) | 186 | WP_004889534.1 | DUF2759 domain-containing protein | - |
| NSQ23_RS05290 (NSQ23_05290) | - | 1004705..1005337 (+) | 633 | WP_339173523.1 | MBL fold metallo-hydrolase | - |
| NSQ23_RS05295 (NSQ23_05295) | - | 1005479..1006549 (+) | 1071 | WP_339173526.1 | SAM-dependent methyltransferase | - |
| NSQ23_RS05300 (NSQ23_05300) | - | 1006579..1006821 (-) | 243 | WP_192948263.1 | DUF2626 domain-containing protein | - |
| NSQ23_RS05305 (NSQ23_05305) | - | 1006891..1007589 (-) | 699 | WP_004889538.1 | helix-turn-helix domain-containing protein | - |
| NSQ23_RS05310 (NSQ23_05310) | comGA | 1007929..1008999 (+) | 1071 | WP_339173529.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| NSQ23_RS05315 (NSQ23_05315) | comGB | 1008983..1010014 (+) | 1032 | WP_339173531.1 | competence type IV pilus assembly protein ComGB | - |
| NSQ23_RS05320 (NSQ23_05320) | comGC | 1010028..1010324 (+) | 297 | WP_339173533.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| NSQ23_RS05325 (NSQ23_05325) | comGD | 1010317..1010754 (+) | 438 | WP_339173535.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ23_RS05330 (NSQ23_05330) | comGE | 1010738..1011046 (+) | 309 | WP_339173538.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ23_RS05335 (NSQ23_05335) | comGF | 1011043..1011477 (+) | 435 | WP_004889548.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ23_RS05340 (NSQ23_05340) | comGG | 1011521..1011853 (+) | 333 | WP_339173541.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ23_RS05345 (NSQ23_05345) | - | 1011868..1012374 (+) | 507 | WP_004889550.1 | shikimate kinase | - |
| NSQ23_RS05350 (NSQ23_05350) | - | 1012401..1012589 (+) | 189 | WP_004889551.1 | YqzE family protein | - |
| NSQ23_RS05355 (NSQ23_05355) | - | 1012604..1013374 (-) | 771 | WP_339173543.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40009.77 Da Isoelectric Point: 8.4735
>NTDB_id=965176 NSQ23_RS05310 WP_339173529.1 1007929..1008999(+) (comGA) [Anoxybacillus sp. FSL W8-1294]
MQTIEQLADRLVEDAYILQASDIHIVPRKQDALVQFRLGGMLVTKHVLSKQMCERLLAHFKFLADMDIGERRRPQSGAME
MNVAHTTVHLRLSTLPTIYDESLVIRLLPLHSSLPLKQLALFPSTIKKLLALLNYSHGLMIFTGPTGSGKTTTLYSLLNV
CRHHFQRNVITLEDPVEKRAEDVLQVQVNEKAGITYAAGLKAILRHDPDVIMVGEIRDAETARIAVRAALTGHLVLTTMH
TKDAVGAIYRLLEFGVPFQEMAQTLVAVTAQRLVQLKCPFCEAECSPFCRQYRPVRRVGVYELLYGSELAQAMRVAKGEQ
STYVYTRLKDVIKKGIALGFLHEHVIESWLLDEATS
MQTIEQLADRLVEDAYILQASDIHIVPRKQDALVQFRLGGMLVTKHVLSKQMCERLLAHFKFLADMDIGERRRPQSGAME
MNVAHTTVHLRLSTLPTIYDESLVIRLLPLHSSLPLKQLALFPSTIKKLLALLNYSHGLMIFTGPTGSGKTTTLYSLLNV
CRHHFQRNVITLEDPVEKRAEDVLQVQVNEKAGITYAAGLKAILRHDPDVIMVGEIRDAETARIAVRAALTGHLVLTTMH
TKDAVGAIYRLLEFGVPFQEMAQTLVAVTAQRLVQLKCPFCEAECSPFCRQYRPVRRVGVYELLYGSELAQAMRVAKGEQ
STYVYTRLKDVIKKGIALGFLHEHVIESWLLDEATS
Nucleotide
Download Length: 1071 bp
>NTDB_id=965176 NSQ23_RS05310 WP_339173529.1 1007929..1008999(+) (comGA) [Anoxybacillus sp. FSL W8-1294]
TTGCAAACAATCGAGCAATTGGCGGACCGACTCGTTGAGGATGCGTATATTCTTCAAGCTTCTGACATTCATATCGTTCC
GCGTAAGCAAGATGCGCTTGTTCAATTTCGGTTAGGAGGGATGCTTGTTACAAAGCATGTGCTATCTAAACAAATGTGTG
AACGTTTGCTTGCTCATTTCAAGTTTCTCGCTGATATGGATATTGGTGAACGTCGCCGCCCGCAAAGCGGAGCAATGGAA
ATGAACGTTGCCCACACAACTGTCCATCTTCGTTTATCGACATTGCCTACGATTTACGACGAAAGCTTAGTTATCCGCTT
GCTCCCGTTACATTCATCTCTTCCGCTCAAGCAACTCGCATTATTTCCTTCAACGATAAAAAAGTTGCTCGCGCTATTAA
ACTATTCCCATGGGCTTATGATTTTCACAGGACCAACAGGATCGGGAAAGACAACAACGTTATACAGTTTGTTAAACGTA
TGTCGCCATCATTTTCAACGAAATGTCATTACGTTAGAAGATCCGGTTGAAAAGCGGGCGGAAGATGTGTTGCAAGTACA
AGTGAACGAAAAAGCTGGCATTACGTATGCTGCAGGATTAAAAGCGATTTTGCGACACGATCCCGATGTGATTATGGTAG
GAGAAATTCGTGATGCCGAAACGGCACGAATAGCTGTACGCGCAGCGCTTACAGGACATCTTGTGCTAACAACGATGCAT
ACGAAGGATGCGGTTGGAGCGATTTATCGTCTTCTTGAGTTTGGTGTACCATTTCAAGAAATGGCGCAAACGTTAGTCGC
TGTGACAGCCCAACGTCTTGTGCAATTGAAATGTCCGTTTTGTGAAGCGGAGTGCTCACCTTTTTGCCGACAGTATCGAC
CTGTTCGTCGAGTCGGTGTTTATGAATTATTATACGGAAGTGAACTGGCACAAGCGATGCGGGTAGCGAAAGGGGAGCAA
TCGACATACGTGTATACTCGGTTAAAAGATGTGATTAAAAAAGGCATTGCGCTCGGTTTTTTACACGAGCATGTCATTGA
AAGTTGGTTGTTAGATGAAGCGACGTCGTAA
TTGCAAACAATCGAGCAATTGGCGGACCGACTCGTTGAGGATGCGTATATTCTTCAAGCTTCTGACATTCATATCGTTCC
GCGTAAGCAAGATGCGCTTGTTCAATTTCGGTTAGGAGGGATGCTTGTTACAAAGCATGTGCTATCTAAACAAATGTGTG
AACGTTTGCTTGCTCATTTCAAGTTTCTCGCTGATATGGATATTGGTGAACGTCGCCGCCCGCAAAGCGGAGCAATGGAA
ATGAACGTTGCCCACACAACTGTCCATCTTCGTTTATCGACATTGCCTACGATTTACGACGAAAGCTTAGTTATCCGCTT
GCTCCCGTTACATTCATCTCTTCCGCTCAAGCAACTCGCATTATTTCCTTCAACGATAAAAAAGTTGCTCGCGCTATTAA
ACTATTCCCATGGGCTTATGATTTTCACAGGACCAACAGGATCGGGAAAGACAACAACGTTATACAGTTTGTTAAACGTA
TGTCGCCATCATTTTCAACGAAATGTCATTACGTTAGAAGATCCGGTTGAAAAGCGGGCGGAAGATGTGTTGCAAGTACA
AGTGAACGAAAAAGCTGGCATTACGTATGCTGCAGGATTAAAAGCGATTTTGCGACACGATCCCGATGTGATTATGGTAG
GAGAAATTCGTGATGCCGAAACGGCACGAATAGCTGTACGCGCAGCGCTTACAGGACATCTTGTGCTAACAACGATGCAT
ACGAAGGATGCGGTTGGAGCGATTTATCGTCTTCTTGAGTTTGGTGTACCATTTCAAGAAATGGCGCAAACGTTAGTCGC
TGTGACAGCCCAACGTCTTGTGCAATTGAAATGTCCGTTTTGTGAAGCGGAGTGCTCACCTTTTTGCCGACAGTATCGAC
CTGTTCGTCGAGTCGGTGTTTATGAATTATTATACGGAAGTGAACTGGCACAAGCGATGCGGGTAGCGAAAGGGGAGCAA
TCGACATACGTGTATACTCGGTTAAAAGATGTGATTAAAAAAGGCATTGCGCTCGGTTTTTTACACGAGCATGTCATTGA
AAGTTGGTTGTTAGATGAAGCGACGTCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
59.322 |
99.438 |
0.59 |
| pilB | Glaesserella parasuis strain SC1401 |
40.571 |
98.315 |
0.399 |
| pilB | Vibrio cholerae strain A1552 |
37.607 |
98.596 |
0.371 |