Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSU05_RS17905 Genome accession   NZ_CP150177
Coordinates   3487250..3487939 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. EU52     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482250..3492939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS17870 (NSU05_17870) flgN 3482431..3482913 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NSU05_RS17875 (NSU05_17875) flgM 3482929..3483195 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU05_RS17880 (NSU05_17880) - 3483276..3483695 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  NSU05_RS17885 (NSU05_17885) comFC 3483768..3484490 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  NSU05_RS17890 (NSU05_17890) comFB 3484454..3484750 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSU05_RS17895 (NSU05_17895) comFA 3484810..3486201 (-) 1392 WP_038429730.1 ATP-dependent helicase ComFA Machinery gene
  NSU05_RS17900 (NSU05_17900) - 3486307..3487152 (-) 846 WP_038429731.1 DegV family protein -
  NSU05_RS17905 (NSU05_17905) degU 3487250..3487939 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSU05_RS17910 (NSU05_17910) degS 3488022..3489179 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSU05_RS17915 (NSU05_17915) - 3489396..3490049 (+) 654 WP_003227979.1 YigZ family protein -
  NSU05_RS17920 (NSU05_17920) tagV 3490049..3491224 (+) 1176 WP_038429732.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NSU05_RS17925 (NSU05_17925) - 3491297..3492373 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=965113 NSU05_RS17905 WP_003219701.1 3487250..3487939(-) (degU) [Bacillus sp. EU52]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=965113 NSU05_RS17905 WP_003219701.1 3487250..3487939(-) (degU) [Bacillus sp. EU52]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment