Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NSU05_RS17885 Genome accession   NZ_CP150177
Coordinates   3483768..3484490 (-) Length   240 a.a.
NCBI ID   WP_038429729.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3478768..3489490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS17850 (NSU05_17850) fliW 3478908..3479339 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NSU05_RS17855 (NSU05_17855) - 3479360..3479935 (-) 576 WP_015384781.1 DUF6470 family protein -
  NSU05_RS17860 (NSU05_17860) flgL 3479982..3480878 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NSU05_RS17865 (NSU05_17865) flgK 3480889..3482412 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NSU05_RS17870 (NSU05_17870) flgN 3482431..3482913 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NSU05_RS17875 (NSU05_17875) flgM 3482929..3483195 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU05_RS17880 (NSU05_17880) - 3483276..3483695 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  NSU05_RS17885 (NSU05_17885) comFC 3483768..3484490 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  NSU05_RS17890 (NSU05_17890) comFB 3484454..3484750 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSU05_RS17895 (NSU05_17895) comFA 3484810..3486201 (-) 1392 WP_038429730.1 ATP-dependent helicase ComFA Machinery gene
  NSU05_RS17900 (NSU05_17900) - 3486307..3487152 (-) 846 WP_038429731.1 DegV family protein -
  NSU05_RS17905 (NSU05_17905) degU 3487250..3487939 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSU05_RS17910 (NSU05_17910) degS 3488022..3489179 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27431.71 Da        Isoelectric Point: 9.4592

>NTDB_id=965111 NSU05_RS17885 WP_038429729.1 3483768..3484490(-) (comFC) [Bacillus sp. EU52]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKAYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHYPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=965111 NSU05_RS17885 WP_038429729.1 3483768..3484490(-) (comFC) [Bacillus sp. EU52]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGCTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACTATCCCCTCATTCGCCTGAATAATGAGAAGCAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.5

100

0.975

Multiple sequence alignment