Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSU05_RS17895 Genome accession   NZ_CP150177
Coordinates   3484810..3486201 (-) Length   463 a.a.
NCBI ID   WP_038429730.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3479810..3491201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS17860 (NSU05_17860) flgL 3479982..3480878 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NSU05_RS17865 (NSU05_17865) flgK 3480889..3482412 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NSU05_RS17870 (NSU05_17870) flgN 3482431..3482913 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NSU05_RS17875 (NSU05_17875) flgM 3482929..3483195 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU05_RS17880 (NSU05_17880) - 3483276..3483695 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  NSU05_RS17885 (NSU05_17885) comFC 3483768..3484490 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  NSU05_RS17890 (NSU05_17890) comFB 3484454..3484750 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSU05_RS17895 (NSU05_17895) comFA 3484810..3486201 (-) 1392 WP_038429730.1 ATP-dependent helicase ComFA Machinery gene
  NSU05_RS17900 (NSU05_17900) - 3486307..3487152 (-) 846 WP_038429731.1 DegV family protein -
  NSU05_RS17905 (NSU05_17905) degU 3487250..3487939 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSU05_RS17910 (NSU05_17910) degS 3488022..3489179 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSU05_RS17915 (NSU05_17915) - 3489396..3490049 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52578.71 Da        Isoelectric Point: 10.0082

>NTDB_id=965112 NSU05_RS17895 WP_038429730.1 3484810..3486201(-) (comFA) [Bacillus sp. EU52]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SVDQTLQFAVLKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=965112 NSU05_RS17895 WP_038429730.1 3484810..3486201(-) (comFA) [Bacillus sp. EU52]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATTAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGTTGATCAAACCCTTCAATTCGCTGTTCTAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.568

100

0.996

Multiple sequence alignment