Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NSU16_RS18690 Genome accession   NZ_CP150176
Coordinates   3665094..3665213 (+) Length   39 a.a.
NCBI ID   WP_010332289.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3660094..3670213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS18670 (NSU16_18670) - 3660282..3660983 (+) 702 WP_339191706.1 bacteriocin biosynthesis protein AlbG -
  NSU16_RS18675 (NSU16_18675) - 3660990..3662345 (-) 1356 WP_339178732.1 YncE family protein -
  NSU16_RS18680 (NSU16_18680) - 3662386..3663738 (-) 1353 WP_339191707.1 YncE family protein -
  NSU16_RS18685 (NSU16_18685) rapF 3663965..3665110 (+) 1146 WP_010332288.1 tetratricopeptide repeat protein Regulator
  NSU16_RS18690 (NSU16_18690) phrF 3665094..3665213 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NSU16_RS18695 (NSU16_18695) speB 3665348..3666220 (-) 873 WP_339191708.1 agmatinase -
  NSU16_RS18700 (NSU16_18700) speE 3666281..3667111 (-) 831 WP_168749008.1 spermidine synthase -
  NSU16_RS18705 (NSU16_18705) - 3667312..3669387 (+) 2076 WP_339191709.1 transglycosylase domain-containing protein -
  NSU16_RS18710 (NSU16_18710) - 3669420..3669842 (-) 423 WP_326203975.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.08 Da        Isoelectric Point: 10.4997

>NTDB_id=965040 NSU16_RS18690 WP_010332289.1 3665094..3665213(+) (phrF) [Bacillus sp. FSL K6-1003]
MKLKSKILLSCLALSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=965040 NSU16_RS18690 WP_010332289.1 3665094..3665213(+) (phrF) [Bacillus sp. FSL K6-1003]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTAAGCACAGTGTTTGTCGCAACAAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

85.185

69.231

0.59
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment