Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NSU16_RS12240 Genome accession   NZ_CP150176
Coordinates   2405041..2406111 (-) Length   356 a.a.
NCBI ID   WP_168748237.1    Uniprot ID   A0AAP3CRF1
Organism   Bacillus sp. FSL K6-1003     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2400041..2411111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS12195 (NSU16_12195) tapA 2400516..2401277 (-) 762 WP_339190983.1 amyloid fiber anchoring/assembly protein TapA -
  NSU16_RS12200 (NSU16_12200) - 2401554..2401877 (+) 324 WP_168748230.1 YqzG/YhdC family protein -
  NSU16_RS12205 (NSU16_12205) - 2401920..2402099 (-) 180 WP_003236949.1 YqzE family protein -
  NSU16_RS12210 (NSU16_12210) comGG 2402171..2402545 (-) 375 WP_286058321.1 competence type IV pilus minor pilin ComGG Machinery gene
  NSU16_RS12215 (NSU16_12215) comGF 2402546..2402929 (-) 384 WP_026014740.1 competence type IV pilus minor pilin ComGF Machinery gene
  NSU16_RS12220 (NSU16_12220) comGE 2402955..2403302 (-) 348 WP_168748233.1 competence type IV pilus minor pilin ComGE Machinery gene
  NSU16_RS12225 (NSU16_12225) comGD 2403286..2403717 (-) 432 WP_168748234.1 competence type IV pilus minor pilin ComGD Machinery gene
  NSU16_RS12230 (NSU16_12230) comGC 2403707..2404003 (-) 297 WP_168748235.1 competence type IV pilus major pilin ComGC Machinery gene
  NSU16_RS12235 (NSU16_12235) comGB 2404017..2405054 (-) 1038 WP_339190988.1 competence type IV pilus assembly protein ComGB Machinery gene
  NSU16_RS12240 (NSU16_12240) comGA 2405041..2406111 (-) 1071 WP_168748237.1 competence protein ComGA Machinery gene
  NSU16_RS12245 (NSU16_12245) - 2406464..2406634 (-) 171 WP_339190991.1 hypothetical protein -
  NSU16_RS12250 (NSU16_12250) - 2406866..2407816 (-) 951 WP_010334929.1 magnesium transporter CorA family protein -
  NSU16_RS12255 (NSU16_12255) - 2407960..2409289 (+) 1330 Protein_2363 hemolysin family protein -
  NSU16_RS12260 (NSU16_12260) - 2409369..2410208 (-) 840 WP_268451132.1 STAS domain-containing protein -
  NSU16_RS12270 (NSU16_12270) mgsR 2410441..2410821 (-) 381 WP_026014741.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40445.55 Da        Isoelectric Point: 8.6434

>NTDB_id=965011 NSU16_RS12240 WP_168748237.1 2405041..2406111(-) (comGA) [Bacillus sp. FSL K6-1003]
MDSIENISRTLIEEAYKTKASDIHIVPRERDAIIHFRVDNALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQSGSLT
LKLKEGDVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPQTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLIQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAQIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPYCENGCSSVYCRLSRNIRRASVYELLYGKNLQQCIQEAKGD
NANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=965011 NSU16_RS12240 WP_168748237.1 2405041..2406111(-) (comGA) [Bacillus sp. FSL K6-1003]
TTGGATTCGATAGAAAACATAAGTAGAACCTTAATTGAAGAGGCGTATAAGACGAAGGCCTCTGACATTCACATTGTGCC
AAGGGAACGGGACGCGATCATCCATTTTCGGGTTGACAATGCATTGCTGAAAAAGCGAAACATGAAAAAAGAAGAGTGTG
TAAGGCTCATTTCTCATTTTAAGTTTCTCTCAGCTATGGACATTGGGGAGAGAAGAAAGCCGCAAAGTGGATCGCTTACT
CTAAAATTAAAAGAGGGTGACGTTCACTTAAGGATGTCAACGCTCCCGACAATTAACGAAGAAAGCCTCGTCATCAGAGT
GATGCCTCAGTATAATATCCCTTCGATTGATAAACTGTCTTTATTCCCACAGACAGGAGCCACCTTGCTTTCATTTTTAA
AACACTCCCACGGCATGCTGATTTTTACCGGACCAACAGGCTCTGGGAAAACAACAACGTTATATTCTCTGATTCAATAT
GCAAAAAAACATTTTAATCGAAACATTGTCACACTTGAAGATCCAGTGGAAACGAGGGATGAAGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCCGGTGTCACATACTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCCGATATGATCATCTTAG
GTGAGATTAGAGATGCTGAAACAGCCCAAATCGCGGTGCGGGCAGCGATGACTGGTCATTTAGTGCTGACGAGCCTTCAT
ACGAGAGATGCCAAGGGCGCGATTTACAGGCTGCTTGAATTTGGCATTAATATGAATGAAATCGAGCAGACAGTTATTGC
GATAGCGGCTCAGCGTTTAGTTGATTTGGCTTGCCCGTATTGTGAAAACGGATGTTCTTCAGTGTATTGCCGACTGTCAC
GAAACATAAGGAGAGCAAGCGTATACGAGCTGCTATACGGGAAAAACCTTCAGCAGTGTATTCAGGAAGCAAAAGGGGAC
AATGCAAATTACCAATATCAAACGCTGCGTCAAATTATAAGAAAAGGGATTGCGCTCGGCTATTTAACGACAAATAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

94.663

100

0.947
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.283

97.191

0.362

Multiple sequence alignment