Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSU16_RS12180 Genome accession   NZ_CP150176
Coordinates   2398687..2399022 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. FSL K6-1003     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2393687..2404022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS12160 (NSU16_12160) gcvT 2394281..2395369 (-) 1089 WP_339190972.1 glycine cleavage system aminomethyltransferase GcvT -
  NSU16_RS12165 (NSU16_12165) - 2395812..2397485 (+) 1674 WP_268504993.1 SNF2-related protein -
  NSU16_RS12170 (NSU16_12170) - 2397506..2398300 (+) 795 WP_339190975.1 YqhG family protein -
  NSU16_RS12175 (NSU16_12175) sinI 2398480..2398653 (+) 174 WP_339190978.1 anti-repressor SinI family protein Regulator
  NSU16_RS12180 (NSU16_12180) sinR 2398687..2399022 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSU16_RS12185 (NSU16_12185) tasA 2399110..2399895 (-) 786 WP_168748227.1 biofilm matrix protein TasA -
  NSU16_RS12190 (NSU16_12190) - 2399960..2400544 (-) 585 WP_339190980.1 signal peptidase I -
  NSU16_RS12195 (NSU16_12195) tapA 2400516..2401277 (-) 762 WP_339190983.1 amyloid fiber anchoring/assembly protein TapA -
  NSU16_RS12200 (NSU16_12200) - 2401554..2401877 (+) 324 WP_168748230.1 YqzG/YhdC family protein -
  NSU16_RS12205 (NSU16_12205) - 2401920..2402099 (-) 180 WP_003236949.1 YqzE family protein -
  NSU16_RS12210 (NSU16_12210) comGG 2402171..2402545 (-) 375 WP_286058321.1 competence type IV pilus minor pilin ComGG Machinery gene
  NSU16_RS12215 (NSU16_12215) comGF 2402546..2402929 (-) 384 WP_026014740.1 competence type IV pilus minor pilin ComGF Machinery gene
  NSU16_RS12220 (NSU16_12220) comGE 2402955..2403302 (-) 348 WP_168748233.1 competence type IV pilus minor pilin ComGE Machinery gene
  NSU16_RS12225 (NSU16_12225) comGD 2403286..2403717 (-) 432 WP_168748234.1 competence type IV pilus minor pilin ComGD Machinery gene
  NSU16_RS12230 (NSU16_12230) comGC 2403707..2404003 (-) 297 WP_168748235.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=965004 NSU16_RS12180 WP_003226345.1 2398687..2399022(+) (sinR) [Bacillus sp. FSL K6-1003]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=965004 NSU16_RS12180 WP_003226345.1 2398687..2399022(+) (sinR) [Bacillus sp. FSL K6-1003]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment