Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACICHK_RS39200 Genome accession   NZ_CP174283
Coordinates   8923246..8924238 (-) Length   330 a.a.
NCBI ID   WP_406840720.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8918246..8929238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS39170 (ACICHK_39170) - 8918312..8919385 (-) 1074 WP_406840714.1 SMI1/KNR4 family protein -
  ACICHK_RS39175 (ACICHK_39175) - 8919858..8920721 (-) 864 WP_406840715.1 hypothetical protein -
  ACICHK_RS39180 (ACICHK_39180) - 8920879..8921319 (-) 441 WP_406840716.1 SMI1/KNR4 family protein -
  ACICHK_RS39185 (ACICHK_39185) - 8921750..8922337 (+) 588 WP_406840717.1 hypothetical protein -
  ACICHK_RS39190 (ACICHK_39190) - 8922369..8922794 (-) 426 WP_406840718.1 transposase -
  ACICHK_RS39195 (ACICHK_39195) - 8922800..8923036 (-) 237 WP_406840719.1 hypothetical protein -
  ACICHK_RS39200 (ACICHK_39200) cytR 8923246..8924238 (-) 993 WP_406840720.1 LacI family DNA-binding transcriptional regulator Regulator
  ACICHK_RS39205 (ACICHK_39205) - 8924560..8926290 (+) 1731 WP_406840721.1 discoidin domain-containing protein -
  ACICHK_RS39210 (ACICHK_39210) - 8926393..8927772 (+) 1380 WP_406840722.1 DUF1996 domain-containing protein -
  ACICHK_RS39215 (ACICHK_39215) - 8927748..8928302 (+) 555 WP_406840723.1 DUF305 domain-containing protein -
  ACICHK_RS39220 (ACICHK_39220) - 8928277..8928489 (-) 213 WP_406840724.1 hypothetical protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35228.24 Da        Isoelectric Point: 6.8947

>NTDB_id=964946 ACICHK_RS39200 WP_406840720.1 8923246..8924238(-) (cytR) [Streptomyces sp. AHU1]
MKRPTLTVVAARAGVSKSSVSRVINGETTVAPEIRDVVMQAVRELGYVPNAAARNLVTRRTDAVAVVVSDPPKGVVSDDP
LFSTVVRTVSRELEAVGRRVVLILAESDESRARVERYVAGGHVDGVMLVALHGADPLPAALARMGLPVASFNRTAATDVP
YVALDNAGGAELAVRHLLERGRRRIATITGPLDLYESRERLEGYRATLRDTGRRSIVALGDFTRVSGAEAMRQLLEDDPD
VDAVFAANDLMAIGALRTLHQAGRRVPDDVAVVGFDDIEAAAYTTPALTSVRSSMADQATATVRLLLALIEGGPRKPVIT
PNELVVRESS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=964946 ACICHK_RS39200 WP_406840720.1 8923246..8924238(-) (cytR) [Streptomyces sp. AHU1]
ATGAAACGACCCACGCTCACGGTGGTCGCCGCCCGGGCCGGCGTGTCCAAGTCGAGCGTCTCCCGGGTCATCAACGGGGA
GACCACCGTCGCGCCGGAGATCCGGGACGTCGTCATGCAGGCGGTGCGGGAACTCGGCTACGTGCCGAACGCCGCCGCCC
GCAACCTGGTCACCCGCCGCACGGACGCCGTGGCCGTGGTCGTGTCCGACCCGCCCAAGGGCGTGGTGTCCGACGACCCG
CTGTTCTCCACCGTGGTGCGCACCGTCAGCCGGGAGTTGGAGGCCGTCGGCAGACGCGTGGTGCTGATCCTCGCCGAGTC
CGACGAGAGCCGGGCCCGGGTGGAGCGCTACGTGGCGGGGGGCCACGTGGACGGCGTGATGCTCGTGGCGCTGCACGGCG
CCGATCCCCTGCCGGCCGCGCTCGCCCGCATGGGCCTGCCCGTCGCGTCCTTCAACCGCACCGCCGCGACGGACGTCCCG
TACGTGGCGCTGGACAACGCGGGCGGTGCGGAGCTGGCCGTACGGCACCTGCTGGAGCGGGGCAGACGCCGGATCGCCAC
GATCACCGGGCCGCTGGACCTGTACGAGTCCCGCGAACGGCTCGAGGGGTACCGCGCGACCCTGCGGGACACCGGCCGCC
GCTCGATCGTCGCGCTGGGCGACTTCACGCGGGTGTCGGGCGCGGAGGCCATGCGGCAGCTCCTGGAGGACGACCCGGAC
GTCGACGCGGTGTTCGCGGCCAACGACCTCATGGCCATCGGGGCGCTGCGCACCCTGCACCAGGCGGGCCGCCGGGTCCC
CGACGACGTGGCCGTGGTCGGGTTCGACGACATCGAGGCCGCCGCCTACACCACTCCCGCGCTCACCTCGGTGCGCAGTT
CCATGGCCGACCAGGCCACCGCGACGGTGCGCCTGCTGCTGGCGCTCATCGAGGGCGGCCCCAGGAAGCCGGTGATCACG
CCGAACGAACTCGTGGTCCGCGAGTCCAGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(6-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

34.593

100

0.361

Multiple sequence alignment