Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSS75_RS17075 Genome accession   NZ_CP150175
Coordinates   3274364..3275008 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus sp. FSL K6-1012     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269364..3280008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS17040 (NSS75_17040) - 3270557..3270988 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  NSS75_RS17045 (NSS75_17045) - 3270988..3271329 (+) 342 WP_095713974.1 Na(+)/H(+) antiporter subunit C -
  NSS75_RS17050 (NSS75_17050) - 3271322..3272803 (+) 1482 WP_103671366.1 Na+/H+ antiporter subunit D -
  NSS75_RS17055 (NSS75_17055) - 3272809..3273285 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  NSS75_RS17060 (NSS75_17060) - 3273285..3273569 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  NSS75_RS17065 (NSS75_17065) mnhG 3273553..3273927 (+) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  NSS75_RS17070 (NSS75_17070) - 3273966..3274346 (-) 381 WP_024122679.1 hotdog fold thioesterase -
  NSS75_RS17075 (NSS75_17075) comA 3274364..3275008 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  NSS75_RS17080 (NSS75_17080) comP 3275089..3277389 (-) 2301 WP_339234063.1 histidine kinase Regulator
  NSS75_RS17085 (NSS75_17085) comX 3277401..3277565 (-) 165 WP_105991648.1 competence pheromone ComX -
  NSS75_RS17090 (NSS75_17090) - 3277578..3278438 (-) 861 WP_101860066.1 polyprenyl synthetase family protein -
  NSS75_RS17095 (NSS75_17095) degQ 3278623..3278763 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  NSS75_RS17100 (NSS75_17100) - 3279224..3279592 (+) 369 WP_024122684.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=964945 NSS75_RS17075 WP_024122680.1 3274364..3275008(-) (comA) [Bacillus sp. FSL K6-1012]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=964945 NSS75_RS17075 WP_024122680.1 3274364..3275008(-) (comA) [Bacillus sp. FSL K6-1012]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986

Multiple sequence alignment