Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ACICHK_RS11435 Genome accession   NZ_CP174283
Coordinates   2504959..2507091 (-) Length   710 a.a.
NCBI ID   WP_406836809.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2499959..2512091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS11420 (ACICHK_11420) - 2500815..2501804 (-) 990 WP_406836807.1 TerC/Alx family metal homeostasis membrane protein -
  ACICHK_RS11425 (ACICHK_11425) - 2502151..2504178 (-) 2028 WP_406836808.1 TerD family protein -
  ACICHK_RS11430 (ACICHK_11430) - 2504222..2504800 (-) 579 WP_103553382.1 TerD family protein -
  ACICHK_RS11435 (ACICHK_11435) uvrB 2504959..2507091 (-) 2133 WP_406836809.1 excinuclease ABC subunit UvrB Machinery gene
  ACICHK_RS11440 (ACICHK_11440) - 2507131..2508003 (-) 873 WP_406836810.1 MHYT domain-containing protein -
  ACICHK_RS11445 (ACICHK_11445) - 2508281..2509147 (+) 867 WP_406836811.1 glycerophosphodiester phosphodiesterase -
  ACICHK_RS11450 (ACICHK_11450) - 2509225..2509779 (+) 555 WP_406836812.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACICHK_RS11455 (ACICHK_11455) - 2509838..2510200 (-) 363 WP_406836813.1 cupin domain-containing protein -
  ACICHK_RS11460 (ACICHK_11460) fdhA 2510387..2511619 (+) 1233 WP_406836814.1 formaldehyde dehydrogenase, glutathione-independent -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 80029.65 Da        Isoelectric Point: 4.9562

>NTDB_id=964890 ACICHK_RS11435 WP_406836809.1 2504959..2507091(-) (uvrB) [Streptomyces sp. AHU1]
MRPVSKIERSVAPFEVVSHFQPSGDQPTAIADLEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVSLKVGDEIDRDDLLRRFVDIQYTRNDVAFARGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDNQVYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQNKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLIDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQQRIGQTVYL
SATPGNYELSRSDGHVEQIIRPTGLIDPQVIVKSTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQIAYNKERGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKTKDGKGAKAPVPALGG
KATRAAKSAKGKDATPTDRPAAELAQQIEDLTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGIA

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=964890 ACICHK_RS11435 WP_406836809.1 2504959..2507091(-) (uvrB) [Streptomyces sp. AHU1]
ATGCGGCCCGTATCCAAGATCGAACGTTCGGTGGCGCCCTTCGAGGTCGTCAGCCACTTCCAGCCGAGCGGTGACCAGCC
CACGGCCATCGCCGACCTGGAGAAGCGCATCCGCGCAGGCGAGAAGGACGTCGTCCTGCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCCTGGATGATCGAGAAGCTCCAGCGGCCCACGCTCGTCATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAATACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTGACCCGCCGCGATGTCGTCGTGGTCGCCTCGGTGTCCTGCATTTACGGCCTCGGCACGCCG
CAGGAGTACGTGGACCGGATGGTCAGCCTCAAGGTCGGCGACGAGATCGACCGTGACGACCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGCAACGACGTGGCCTTCGCGCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TGTACGAGGAGCTCGCGGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCACTGTCCACGCTGCACCCGCTGACCGGC
GAGGTCATCAGCGACGACAACCAGGTTTACGTCTTTCCCGCGTCCCACTACGTGGCGGGCCCCGAGCGCATGGAGCGCGC
CGTCAACGACATCGAGAAGGAGCTGGGGGAACGCCTCGCCGAGCTGGAGAAGCAGAACAAGCTCCTGGAGGCCCAGCGCC
TGCGCATGCGGACGACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGTGTCGAGAACTACTCGATGCAC
TTCGACGGCCGTGAACCCGGCTCTCCGCCGAACACGCTGATCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTTCCGCAGATCGGCGCGATGTACGAGGGTGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGACTGCCCTCGGCCCTGGACAACCGTCCCTTGAAGTGGGAGGAGTTCCAGCAGCGCATCGGCCAGACCGTCTACCTC
TCGGCGACCCCGGGGAACTACGAGCTGTCCCGCTCGGACGGCCACGTCGAGCAGATCATCCGGCCCACCGGCCTGATCGA
CCCCCAGGTGATCGTCAAGTCCACCGAGGGCCAGATCGACGACCTTGTGCACGAGATCCGGCAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAACTGGGCATCCAGGTG
CGCTACCTGCACAGCGACGTCGACACGCTGCGCCGCGTCGAGCTGCTGCGCGAACTGCGTGCCGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGGCTCGACCTCCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCAGGGACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCGGACAAGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGATCGCCTACAACAA
GGAGCGGGGCATCGACCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTGGCGCAGATCGCCCGTGAGGACGTCGACA
CCGAGCAGCTGCTCGGCTCCGGCTACCGCAAGACGAAGGACGGCAAGGGCGCCAAGGCTCCCGTGCCCGCGCTGGGCGGC
AAGGCGACCCGTGCCGCCAAGTCCGCCAAGGGCAAGGACGCCACGCCGACCGACCGTCCCGCGGCCGAACTCGCCCAGCA
GATCGAGGACCTGACGGAACGGATGCGCGCGGCGGCGGCGGACCTCCAGTTCGAGATCGCGGCCCGTCTGCGCGACGAGG
TGTCCGAGATGAAGAAGGAACTGCGGCAGATGAAAGAGGCGGGAATCGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(666-699)

Type III restriction enzyme, res subunit (ResIII)

(22-134)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB interaction domain (UvrB_inter)

(168-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.851

96.62

0.549
  uvrB Streptococcus pneumoniae R6

56.851

96.62

0.549
  uvrB Streptococcus pneumoniae D39

56.851

96.62

0.549

Multiple sequence alignment