Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACICHK_RS14000 Genome accession   NZ_CP174283
Coordinates   3086540..3088273 (+) Length   577 a.a.
NCBI ID   WP_406837156.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081540..3093273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS13970 (ACICHK_13970) - 3082489..3083607 (-) 1119 WP_406837155.1 helix-turn-helix domain-containing protein -
  ACICHK_RS13990 (ACICHK_13990) - 3084550..3084855 (+) 306 WP_103548717.1 hypothetical protein -
  ACICHK_RS13995 (ACICHK_13995) - 3084926..3086371 (+) 1446 WP_151468061.1 FGGY family carbohydrate kinase -
  ACICHK_RS14000 (ACICHK_14000) rcrP 3086540..3088273 (+) 1734 WP_406837156.1 ABC transporter ATP-binding protein Regulator
  ACICHK_RS14005 (ACICHK_14005) rcrQ 3088273..3090252 (+) 1980 WP_406837157.1 ABC transporter ATP-binding protein Regulator
  ACICHK_RS14010 (ACICHK_14010) - 3090325..3091653 (-) 1329 WP_406837158.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62568.87 Da        Isoelectric Point: 6.4238

>NTDB_id=964892 ACICHK_RS14000 WP_406837156.1 3086540..3088273(+) (rcrP) [Streptomyces sp. AHU1]
MLIRLLRTHLSPYKKPIAMLVLLQFLQTCATLYLPTLNAKIIDNGVVKGDTGYILTFGALMIGISLAQVVCNIGAVYHGA
RTASAVGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFKGANTELTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PVAPVVELRRHGHLEIRDAGFRYPGAEEPVLRSVDLVARPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIDPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEASDEELWHALEVAQAKGFVEALENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTEETAEATVVIVAQRVSTIREADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=964892 ACICHK_RS14000 WP_406837156.1 3086540..3088273(+) (rcrP) [Streptomyces sp. AHU1]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCATGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACCCTCAACGCGAAGATCATCGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGACCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTCGTCTGCAACATCGGGGCCGTCTACCACGGAGCC
CGTACGGCGTCCGCGGTGGGCCGGGACGTCCGGGGCGCCGTCTTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCACTTCGGCGCGCCGTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGTGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCATCGCCGTGGTGCCGACGCTCGGCATCTGCGTGACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCGTTCGTGCGCGACG
GCTACGAGAAGGACCGCTTCAAGGGCGCCAACACCGAGCTGACCGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGATCTGACCGCGTTCCTGGCCTATCTGATGCAGATCGTGATGTCGGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGAGCAGCGTGGTCCCG
CCCGTCGCGCCGGTCGTGGAGCTGCGCCGGCACGGCCACCTGGAGATCCGCGACGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTCAGGTCCGTCGACCTGGTCGCCCGCCCCGGCGAGGTGACCGCGGTCATCGGGTCGACGGGCAGCGGCA
AGTCGACCCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGACCCCAAGCTGCTGGCCAGGACGGTCGGACTGGTCCCGCAGAAGCCCTACCTGTTCGCGGGGACCGTCGCCAC
GAACCTGCGGTACGGCAACCCGGAGGCGAGTGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGGCGCTGGAGAACGGGCTGGACTCCCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGCGCGGCGCTCACCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCA
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGGCACCACGAACTGATGGCGGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.899

97.574

0.38

Multiple sequence alignment