Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACICHK_RS14005 Genome accession   NZ_CP174283
Coordinates   3088273..3090252 (+) Length   659 a.a.
NCBI ID   WP_406837157.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083273..3095252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS13990 (ACICHK_13990) - 3084550..3084855 (+) 306 WP_103548717.1 hypothetical protein -
  ACICHK_RS13995 (ACICHK_13995) - 3084926..3086371 (+) 1446 WP_151468061.1 FGGY family carbohydrate kinase -
  ACICHK_RS14000 (ACICHK_14000) rcrP 3086540..3088273 (+) 1734 WP_406837156.1 ABC transporter ATP-binding protein Regulator
  ACICHK_RS14005 (ACICHK_14005) rcrQ 3088273..3090252 (+) 1980 WP_406837157.1 ABC transporter ATP-binding protein Regulator
  ACICHK_RS14010 (ACICHK_14010) - 3090325..3091653 (-) 1329 WP_406837158.1 RNA polymerase sigma factor -
  ACICHK_RS14015 (ACICHK_14015) dnaG 3091899..3093800 (-) 1902 WP_406837159.1 DNA primase -
  ACICHK_RS14020 (ACICHK_14020) - 3093909..3095174 (-) 1266 WP_406837160.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 70799.34 Da        Isoelectric Point: 6.0938

>NTDB_id=964893 ACICHK_RS14005 WP_406837157.1 3088273..3090252(+) (rcrQ) [Streptomyces sp. AHU1]
MAGPMGRMMAGGGPDQRSMDFKVSGRRLLAQFKPERATLYVMLVAVVLSVGLSVVGPKILGRATDLVFAGIVGRQMPAGA
TKAQALDSMRAHGQGAVADMLSGTDFTPGQGIDFDAVGQVLLLALGTFLLAGLLMAVATRLVNKAVNKTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLVMMFWVSPLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRADESAAQFAEQNEKLYEAGFRAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDADEQEADPAVSARPEELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTDGRITLDGVDVKSMSRDELRAGIGMVLQDT
WLFGGTIADNIAYGAGVEGAARSASGKGGGGRRVGVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLI
TIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGSIVEQGAHAELLESG
GAYARLYQAQFAQAVAEVD

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=964893 ACICHK_RS14005 WP_406837157.1 3088273..3090252(+) (rcrQ) [Streptomyces sp. AHU1]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGCTCGATGGATTTCAAGGTGTCGGGCCGACG
GCTCCTCGCCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTGATGCTGGTCGCCGTCGTGCTGAGCGTGGGGCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGGATCGTCGGCCGTCAGATGCCCGCCGGGGCC
ACCAAGGCCCAGGCCCTCGACTCGATGCGCGCGCACGGCCAGGGCGCCGTCGCCGACATGCTCTCGGGGACGGACTTCAC
CCCCGGCCAGGGCATCGACTTCGACGCCGTCGGACAGGTCCTGCTGCTCGCCCTCGGCACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACAAGGCCGTCAACAAGACGGTCTACCGCATGCGCGAGGACCTGCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATGGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGCGTGCTCGTGATGATGT
TCTGGGTGTCGCCGCTGCTCGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTGGCCACCCGGATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGACGGGCGGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGCTGTACGAGGCCG
GTTTCCGGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCG
GTGGTCGGCGGTCTGCGGGTCGCCTCGGGCTCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGGTCTTCGAGG
TCCTGGACGCGGACGAGCAGGAGGCGGACCCGGCGGTGTCGGCCCGCCCCGAGGAGCTGCGCGGGCGGGTGGCGCTGGAG
AACGTCTCCTTCCGGTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAAGGTGGAGCCCGGTCACACGGTGGC
CATCGTCGGCCCCACCGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGACGTCACGGACGGCCGGA
TCACCCTCGACGGGGTCGACGTGAAGTCCATGTCCCGTGACGAGCTGAGGGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGCACGATCGCCGACAACATCGCGTACGGGGCCGGAGTGGAAGGGGCGGCGCGCAGCGCCTCCGGCAA
GGGCGGTGGTGGGCGACGGGTGGGCGTCACGCGCGGGGAGATCGAGGAGGCGGCGCGCGCGGCGCACGCCGACCGGTTCA
TCCGCACCCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGGGGGTCAGCGCGGGCGAGAAGCAGCTGATC
ACCATCGCGCGGGCGTTCCTGTCGGACCCGGTCATCCTGGTGCTCGACGAGGCGACCAGCTCCGTGGACACCCGGACCGA
GGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTTCGTGATCGCCCACCGTCTGTCGACGATCC
GGGACGCGGACACCATCCTCGTGATGGAGGACGGGTCCATCGTGGAGCAGGGCGCCCACGCGGAGCTGCTGGAGTCCGGC
GGAGCCTACGCCCGCCTCTACCAGGCCCAGTTCGCCCAGGCGGTGGCCGAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-580)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.213

96.358

0.378