Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NSQ24_RS12850 Genome accession   NZ_CP150171
Coordinates   2575890..2576606 (-) Length   238 a.a.
NCBI ID   WP_339167944.1    Uniprot ID   -
Organism   Brevibacillus sp. FSL L8-0520     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2570890..2581606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ24_RS12830 (NSQ24_12830) - 2571358..2572275 (+) 918 WP_039071136.1 NAD(P)/FAD-dependent oxidoreductase -
  NSQ24_RS12840 (NSQ24_12840) - 2573305..2574246 (+) 942 WP_339167940.1 aminoglycoside phosphotransferase family protein -
  NSQ24_RS12845 (NSQ24_12845) - 2574502..2575893 (-) 1392 WP_339167942.1 HAMP domain-containing sensor histidine kinase -
  NSQ24_RS12850 (NSQ24_12850) scnR 2575890..2576606 (-) 717 WP_339167944.1 response regulator transcription factor Regulator
  NSQ24_RS12855 (NSQ24_12855) - 2576782..2577693 (+) 912 WP_039071133.1 ABC transporter ATP-binding protein -
  NSQ24_RS12860 (NSQ24_12860) - 2577693..2578442 (+) 750 WP_339167947.1 ABC transporter permease -
  NSQ24_RS12865 (NSQ24_12865) - 2578457..2579185 (+) 729 WP_024985056.1 ABC transporter permease -
  NSQ24_RS12870 (NSQ24_12870) - 2579305..2579931 (+) 627 WP_024985057.1 DsbA family oxidoreductase -
  NSQ24_RS12875 (NSQ24_12875) - 2580158..2580754 (+) 597 WP_024985058.1 VanW family protein -
  NSQ24_RS12880 (NSQ24_12880) - 2580946..2581488 (+) 543 WP_003386939.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26749.87 Da        Isoelectric Point: 5.4269

>NTDB_id=964749 NSQ24_RS12850 WP_339167944.1 2575890..2576606(-) (scnR) [Brevibacillus sp. FSL L8-0520]
MDQIKQKKVLIVDDEHEIREMIDSFLRKEGFFRIFHAASCSEAIEVCLSDKPDIAILDVMLPDGDGFSLFSSLRRISDIP
VLFLSARNKDEDRILGLGLGADDYIVKPFLPRELMLRLGAILRRVYAPPKQERLPVFALGSFTVDLEGGVVRSASGEQPL
TAKEHALLKKLYENCGRIVTSDALCNAVWGDDSFGYENTLMVHIRRIREKIESDPSSPEHLLTVRGLGYKLMASEDRA

Nucleotide


Download         Length: 717 bp        

>NTDB_id=964749 NSQ24_RS12850 WP_339167944.1 2575890..2576606(-) (scnR) [Brevibacillus sp. FSL L8-0520]
ATGGACCAGATCAAGCAAAAGAAAGTGCTCATCGTGGATGATGAGCATGAAATACGCGAGATGATCGACAGTTTTTTGCG
AAAGGAAGGCTTTTTTCGGATATTCCATGCGGCAAGCTGCAGCGAGGCGATCGAGGTCTGCCTGTCGGACAAGCCGGACA
TTGCCATTTTGGATGTCATGCTGCCGGATGGGGACGGCTTTTCCCTGTTTTCTTCCCTGCGCAGAATTTCAGACATACCT
GTGCTCTTTCTTTCGGCCAGAAACAAGGATGAAGACCGGATCCTCGGGCTTGGCCTCGGCGCCGACGATTACATTGTCAA
GCCGTTTTTGCCTCGCGAGCTTATGCTGCGCCTGGGAGCCATATTGCGGCGCGTGTACGCTCCGCCAAAGCAGGAGCGGC
TGCCTGTTTTTGCGCTGGGGAGCTTTACTGTCGATTTGGAAGGGGGCGTGGTACGCAGCGCGAGCGGAGAACAGCCGTTG
ACCGCCAAGGAGCATGCCCTGCTGAAAAAGCTGTATGAAAACTGCGGGCGCATCGTCACAAGCGACGCTTTGTGCAACGC
GGTATGGGGTGACGACAGCTTTGGATACGAAAATACCCTCATGGTTCACATCCGGCGCATCCGGGAAAAAATCGAGTCGG
ATCCCTCCTCCCCTGAACACCTGCTGACTGTAAGAGGGCTGGGCTACAAGCTGATGGCAAGCGAGGATCGGGCATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.435

96.639

0.487
  micA Streptococcus pneumoniae Cp1015

41.304

96.639

0.399
  vicR Streptococcus mutans UA159

39.485

97.899

0.387

Multiple sequence alignment