Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   NYE79_RS08485 Genome accession   NZ_CP150168
Coordinates   1720634..1722616 (-) Length   660 a.a.
NCBI ID   WP_084917707.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715634..1727616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS08485 (NYE79_08485) amiA3 1720634..1722616 (-) 1983 WP_084917707.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS08490 (NYE79_08490) rfbD 1722854..1723708 (+) 855 WP_049501014.1 dTDP-4-dehydrorhamnose reductase -
  NYE79_RS08495 (NYE79_08495) rfbB 1723769..1724815 (-) 1047 WP_339293684.1 dTDP-glucose 4,6-dehydratase -
  NYE79_RS08500 (NYE79_08500) - 1724834..1725427 (-) 594 WP_000131467.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  NYE79_RS08505 (NYE79_08505) rfbA 1725428..1726297 (-) 870 WP_000676121.1 glucose-1-phosphate thymidylyltransferase RfbA -
  NYE79_RS08510 (NYE79_08510) - 1726369..1727421 (-) 1053 WP_251463991.1 galactofuranosyltransferase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73363.65 Da        Isoelectric Point: 4.5642

>NTDB_id=964627 NYE79_RS08485 WP_084917707.1 1720634..1722616(-) (amiA3) [Streptococcus sp. FSL W8-0197]
MKSSKLLALAGVTLLAAATLAACSGSSSNAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYSETEKTFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKVSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKAALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVIDIQQLQKDDV
QNITYFAETAAGEDWDISDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKAVTTDEYQKAQEKW
LKEKEESNKKAQEELANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=964627 NYE79_RS08485 WP_084917707.1 1720634..1722616(-) (amiA3) [Streptococcus sp. FSL W8-0197]
ATGAAAAGTTCAAAACTACTTGCCCTTGCGGGTGTGACGTTATTGGCAGCTGCGACTCTTGCGGCCTGCTCTGGATCAAG
TTCAAATGCTAAAGGTGAGAAAACATTCTCATACATTTACGAAACGGATCCTGATAACCTAAACTATTTGACAACTGGTA
AGGCAGCTACAGCAAATATTACGAGCAACGTTATTGATGGCTTACTTGAAAATGACCGCTACGGTAACTTTGTACCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGATGGATTGACTTACACGTATACACTCCGAAAGGATGCAAAATGGTATACATC
TGAAGGTGAGGAATATGCAGAAGTTAAAGCTCAAGACTTTGTAACTGGTCTTAAGTATGCTGCTGATAAGAAATCAGATG
GTCTTTACCTGGTTCAGGAATCTATCAAGGGATTGGATGCCTATGTCAAAGGAGAAATTACAGATTTTTCTCAAGTAGGA
ATCAAAGCTCTTGATGATTATACCGTTCAATACACATTGAACAAGCCAGAAAGTTTCTGGAATTCTAAGACAACAATGGG
TGTTCTGGCTCCTGTTAATGAAGAATTTTTGAACTCTAAAGGGGATGACTTTGCTAAAGGTACGGATCCAAGCAGTATTC
TCTATAATGGACCATTCTTACTCAAATCAATCGTAGCCAAATCATCAGTCGAGTTCGAAAAGAATCCAAACTATTGGGAC
AAAGACAATGTCCATCTTGATAAAGTGAAATTATCCTTCTGGGATGGTCAAGATACTAATAAGCCAACTGAAGCTTTCAA
AGACGGTAGCTTTACAATGGCTCGCCTCTTCCCAACAAGTGCTAGTTACTCAGAGACTGAAAAAACATTCAAAGACAATA
TCGTTTATACCCAACAAGATTCTACTACTTATTTAGTAGGCACAAATATCGATCGCCAGTCTTATAAGTACACTTCTAAG
ACAACAGATGAGGAAAAAGTATCAACCAAGAAGGCACTTTTGAATAAGGACTTCCGTCAAGCTATTGCATTTGGTTTTGA
CAGAACAGCCTACGCTTCTCAAGTAAATGGTGCAAGCGGGGCTACTAAACTGCTTCGTAACTTATTTGTTCCTCCTACAT
TTGTACAGGCAGATGGGAAAAACTTTGGGGAATTAGTTAAGGAAAAATTGGTGACCTATGGAGATGAGTGGAGCAACGTA
AACTTGGATGATGCCCAAGATGGACTCTACAATCCTGACAAAGCCAAAGCAGAGTTCGCTAAAGCTAAGGCGGCCCTTCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGATCAAACCAATACAACAAAAGTTCAACGTGTTCAAT
CTTTTAAACAGTCAGTTGAAGAAAATCTAGGATCAGATAATGTGGTTATCGACATCCAACAGCTCCAAAAAGATGATGTT
CAAAACATTACCTACTTCGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTA
TATCGATCCATCTACTTATCTTGATATTATCAAGCCTTCTGTAGGAGAAAATACGAAAACATATCTAGGATTTGATTCTG
GGACAAACAACGCTGCGGCTAAGCAAGTTGGTTTAGAAGATTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAACCACT
GATGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATCCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCATTTGCATACTCTGGTAACAAGGGTATGAGTG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAAGCCGTGACAACAGACGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCCCAAGAAGAACTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.212

100

0.603
  amiA Streptococcus salivarius strain HSISS4

59.758

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.607

100

0.597

Multiple sequence alignment