Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NYE79_RS03565 Genome accession   NZ_CP150168
Coordinates   687839..689797 (+) Length   652 a.a.
NCBI ID   WP_339293792.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 682839..694797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS03540 (NYE79_03540) - 682983..683495 (+) 513 WP_049477472.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  NYE79_RS03545 (NYE79_03545) - 683479..684129 (+) 651 WP_049477473.1 DUF1803 domain-containing protein -
  NYE79_RS03550 (NYE79_03550) - 684231..684431 (+) 201 WP_000051178.1 CsbD family protein -
  NYE79_RS03555 (NYE79_03555) - 684463..685908 (-) 1446 WP_180833375.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  NYE79_RS03560 (NYE79_03560) - 686014..687636 (+) 1623 WP_339293791.1 polysaccharide biosynthesis protein -
  NYE79_RS03565 (NYE79_03565) amiA 687839..689797 (+) 1959 WP_339293792.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS03570 (NYE79_03570) - 689943..691037 (+) 1095 WP_070535100.1 cystathionine gamma-synthase -
  NYE79_RS03575 (NYE79_03575) - 691045..692211 (+) 1167 WP_125328244.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72837.94 Da        Isoelectric Point: 4.7303

>NTDB_id=964604 NYE79_RS03565 WP_339293792.1 687839..689797(+) (amiA) [Streptococcus sp. FSL W8-0197]
MKKSKAKYLTLASVVLSAGILLSACGNSSSASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDYDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=964604 NYE79_RS03565 WP_339293792.1 687839..689797(+) (amiA) [Streptococcus sp. FSL W8-0197]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAGTAGCGCTTCTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTGACCAATTTGGTGGATGGATTGATGGAAAATGACCAATATGGTAACTATGTTCCATCATTG
GCAGAAGATTGGACTGTTTCTCAGGACGGTTTGACCTATACCTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATATGCCCCTGTAACGGCTCAAGACTTTGTGACAGGTTTGAAATACGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAAGCAATTGACGACCAAACAGTTCAGTACACTTTGACACGTCCAGAACCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGACTTCCTGAAATCAAAAGGGGATGATTTTGGTAAGGTAGATCCATCTAGCATTTTGTATA
GTGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTTATCGAATACAAGAAAAATCCAAATTACTGGGACGCTAAA
AATGTCTTTGTGGATGATGTGAAATTGACTTACTATGACGGTAGTGACCAGGATGCCCTAGCTCGTAACTTCGTAGAAGG
AGTCTACAGTTACGCACGTCTCTATCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAATGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAATTTCACGTCTAAATCCTCA
GATATCGAAAAGAAATCTACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTACAACCGTAC
AGCCTATGGAGCTCAATCTCAAGGGGAAGATGGAGCAACGAAGATTATTCGTAACCTAGTGGTACCTCCTACGTTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGACCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCTGTGGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGCTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATTGATATCCAACAGTTATCAACAGATGACTACGATAAT
TCTAGCTACCTCGCTCAAACCGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCTGACTACTTGGATCC
ATCAAGTTATCTAGATATCCTAAATGTCAATAACGGTGGTATGTTGCAAAACCTTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTAGGACTTGATACCTATACTCAAATGTTGGAAGAAGCTAATAAAGAGCAAGACCCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCTATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTGCAAGATAAGACTGTAACGGCTGATGAGTATGAGAAAGCGAAAGAAAAATGGCTAAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.535

100

0.571
  amiA3 Streptococcus thermophilus LMG 18311

56.297

100

0.569
  amiA3 Streptococcus thermophilus LMD-9

55.994

100

0.566

Multiple sequence alignment