Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSU02_RS13500 Genome accession   NZ_CP150165
Coordinates   2777942..2778253 (-) Length   103 a.a.
NCBI ID   WP_063388095.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2772942..2783253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS13465 (NSU02_13465) - 2773507..2775174 (+) 1668 WP_339193042.1 SNF2-related protein -
  NSU02_RS13470 (NSU02_13470) - 2775226..2776023 (+) 798 WP_339195804.1 YqhG family protein -
  NSU02_RS13475 (NSU02_13475) - 2776114..2776293 (-) 180 WP_130156369.1 YqzE family protein -
  NSU02_RS13480 (NSU02_13480) comGG 2776413..2776784 (-) 372 WP_063388099.1 competence type IV pilus minor pilin ComGG -
  NSU02_RS13485 (NSU02_13485) comGF 2776781..2777272 (-) 492 WP_130156367.1 competence type IV pilus minor pilin ComGF -
  NSU02_RS13490 (NSU02_13490) - 2777202..2777528 (-) 327 WP_130156365.1 hypothetical protein -
  NSU02_RS13495 (NSU02_13495) comGD 2777512..2777973 (-) 462 WP_158640149.1 competence type IV pilus minor pilin ComGD -
  NSU02_RS13500 (NSU02_13500) comGC 2777942..2778253 (-) 312 WP_063388095.1 competence type IV pilus major pilin ComGC Machinery gene
  NSU02_RS13505 (NSU02_13505) comGB 2778258..2779289 (-) 1032 WP_339193046.1 competence type IV pilus assembly protein ComGB -
  NSU02_RS13510 (NSU02_13510) comGA 2779282..2780349 (-) 1068 WP_130156359.1 competence type IV pilus ATPase ComGA Machinery gene
  NSU02_RS13515 (NSU02_13515) - 2780666..2780911 (+) 246 WP_063388092.1 DUF2626 domain-containing protein -
  NSU02_RS13520 (NSU02_13520) - 2780966..2781610 (-) 645 WP_063388091.1 MBL fold metallo-hydrolase -
  NSU02_RS13525 (NSU02_13525) - 2781857..2782030 (+) 174 WP_065095533.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11361.25 Da        Isoelectric Point: 5.0078

>NTDB_id=964473 NSU02_RS13500 WP_063388095.1 2777942..2778253(-) (comGC) [Aeribacillus sp. FSL W8-0870]
MKIVKNEHGFTLVEMLVVLLVISILLIITIPNVMAHNKNIQNKGCEGLIDMVQGQVVAYEMEFHQTPTINDLITKGYLPN
NSGKCPNGDEIEIDANGNVIKSN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=964473 NSU02_RS13500 WP_063388095.1 2777942..2778253(-) (comGC) [Aeribacillus sp. FSL W8-0870]
ATGAAAATAGTGAAAAATGAACATGGATTTACATTAGTGGAAATGCTGGTTGTGCTGTTAGTGATCTCGATTTTGCTTAT
TATAACGATTCCGAATGTTATGGCTCATAATAAAAATATTCAAAATAAAGGGTGCGAAGGTTTAATTGATATGGTGCAGG
GTCAAGTCGTCGCATATGAAATGGAGTTTCATCAAACACCAACAATTAATGATTTAATCACTAAAGGGTACTTGCCGAAT
AATTCTGGAAAATGTCCAAATGGTGATGAGATTGAAATTGATGCAAATGGAAACGTCATTAAGAGCAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

57.471

84.466

0.485
  comGC Staphylococcus aureus MW2

39.604

98.058

0.388
  comGC Staphylococcus aureus N315

39.604

98.058

0.388

Multiple sequence alignment