Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NSQ53_RS20375 Genome accession   NZ_CP150164
Coordinates   3869356..3869475 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus sp. PS11(2022) isolate PS11     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3864356..3874475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ53_RS20350 (NSQ53_20350) albG 3864520..3865221 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NSQ53_RS20355 (NSQ53_20355) - 3865227..3866603 (-) 1377 WP_003244415.1 YncE family protein -
  NSQ53_RS20360 (NSQ53_20360) - 3866642..3867997 (-) 1356 WP_003227552.1 YncE family protein -
  NSQ53_RS20365 (NSQ53_20365) - 3867994..3868224 (-) 231 WP_009968328.1 hypothetical protein -
  NSQ53_RS20370 (NSQ53_20370) rapF 3868227..3869372 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  NSQ53_RS20375 (NSQ53_20375) phrF 3869356..3869475 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NSQ53_RS20380 (NSQ53_20380) - 3869574..3870047 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  NSQ53_RS20385 (NSQ53_20385) speB 3870079..3870951 (-) 873 WP_003227545.1 agmatinase -
  NSQ53_RS20390 (NSQ53_20390) speE 3871012..3871842 (-) 831 WP_003227543.1 spermidine synthase -
  NSQ53_RS20395 (NSQ53_20395) - 3872044..3874119 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=964442 NSQ53_RS20375 WP_009968329.1 3869356..3869475(+) (phrF) [Bacillus sp. PS11(2022) isolate PS11]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=964442 NSQ53_RS20375 WP_009968329.1 3869356..3869475(+) (phrF) [Bacillus sp. PS11(2022) isolate PS11]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment