Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSQ81_RS12495 Genome accession   NZ_CP150163
Coordinates   2441540..2441875 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. PS65     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2436540..2446875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ81_RS12475 (NSQ81_12475) gcvT 2437132..2438220 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  NSQ81_RS12480 (NSQ81_12480) - 2438662..2440335 (+) 1674 WP_004398544.1 SNF2-related protein -
  NSQ81_RS12485 (NSQ81_12485) - 2440356..2441150 (+) 795 WP_003230200.1 YqhG family protein -
  NSQ81_RS12490 (NSQ81_12490) sinI 2441333..2441506 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSQ81_RS12495 (NSQ81_12495) sinR 2441540..2441875 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSQ81_RS12500 (NSQ81_12500) tasA 2441968..2442753 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  NSQ81_RS12505 (NSQ81_12505) - 2442817..2443389 (-) 573 WP_003246088.1 signal peptidase I -
  NSQ81_RS12510 (NSQ81_12510) tapA 2443373..2444134 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ81_RS12515 (NSQ81_12515) - 2444406..2444732 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSQ81_RS12520 (NSQ81_12520) - 2444774..2444953 (-) 180 WP_003230176.1 YqzE family protein -
  NSQ81_RS12525 (NSQ81_12525) comGG 2445024..2445398 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  NSQ81_RS12530 (NSQ81_12530) comGF 2445399..2445782 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  NSQ81_RS12535 (NSQ81_12535) comGE 2445808..2446155 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  NSQ81_RS12540 (NSQ81_12540) comGD 2446139..2446570 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  NSQ81_RS12545 (NSQ81_12545) comGC 2446560..2446856 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=964320 NSQ81_RS12495 WP_003226345.1 2441540..2441875(+) (sinR) [Bacillus sp. PS65]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=964320 NSQ81_RS12495 WP_003226345.1 2441540..2441875(+) (sinR) [Bacillus sp. PS65]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment