Detailed information    

insolico Bioinformatically predicted

Overview


Name   degS   Type   Regulator
Locus tag   NSQ12_RS18780 Genome accession   NZ_CP150160
Coordinates   3601542..3602699 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus sp. PS95     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 3596542..3607699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS18750 (NSQ12_18750) - 3596796..3597215 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  NSQ12_RS18755 (NSQ12_18755) comFC 3597288..3598010 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  NSQ12_RS18760 (NSQ12_18760) comFB 3597974..3598270 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ12_RS18765 (NSQ12_18765) comFA 3598330..3599721 (-) 1392 WP_080529868.1 ATP-dependent helicase ComFA Machinery gene
  NSQ12_RS18770 (NSQ12_18770) - 3599827..3600672 (-) 846 WP_003244125.1 DegV family protein -
  NSQ12_RS18775 (NSQ12_18775) degU 3600770..3601459 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ12_RS18780 (NSQ12_18780) degS 3601542..3602699 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ12_RS18785 (NSQ12_18785) - 3602916..3603569 (+) 654 WP_003227979.1 YigZ family protein -
  NSQ12_RS18790 (NSQ12_18790) tagV 3603569..3604744 (+) 1176 WP_064671519.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NSQ12_RS18795 (NSQ12_18795) - 3604817..3605893 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  NSQ12_RS18800 (NSQ12_18800) - 3606038..3607231 (-) 1194 WP_198878547.1 glycosyltransferase family 1 protein -

Sequence


Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=964099 NSQ12_RS18780 WP_003227983.1 3601542..3602699(-) (degS) [Bacillus sp. PS95]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=964099 NSQ12_RS18780 WP_003227983.1 3601542..3602699(-) (degS) [Bacillus sp. PS95]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment