Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NSQ12_RS18755 Genome accession   NZ_CP150160
Coordinates   3597288..3598010 (-) Length   240 a.a.
NCBI ID   WP_038429729.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3592288..3603010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS18720 (NSQ12_18720) fliW 3592428..3592859 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NSQ12_RS18725 (NSQ12_18725) - 3592880..3593455 (-) 576 WP_015384781.1 DUF6470 family protein -
  NSQ12_RS18730 (NSQ12_18730) flgL 3593502..3594398 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NSQ12_RS18735 (NSQ12_18735) flgK 3594409..3595932 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NSQ12_RS18740 (NSQ12_18740) flgN 3595951..3596433 (-) 483 WP_339175349.1 flagellar protein FlgN -
  NSQ12_RS18745 (NSQ12_18745) flgM 3596449..3596715 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ12_RS18750 (NSQ12_18750) - 3596796..3597215 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  NSQ12_RS18755 (NSQ12_18755) comFC 3597288..3598010 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  NSQ12_RS18760 (NSQ12_18760) comFB 3597974..3598270 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ12_RS18765 (NSQ12_18765) comFA 3598330..3599721 (-) 1392 WP_080529868.1 ATP-dependent helicase ComFA Machinery gene
  NSQ12_RS18770 (NSQ12_18770) - 3599827..3600672 (-) 846 WP_003244125.1 DegV family protein -
  NSQ12_RS18775 (NSQ12_18775) degU 3600770..3601459 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ12_RS18780 (NSQ12_18780) degS 3601542..3602699 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27431.71 Da        Isoelectric Point: 9.4592

>NTDB_id=964096 NSQ12_RS18755 WP_038429729.1 3597288..3598010(-) (comFC) [Bacillus sp. PS95]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKAYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHYPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=964096 NSQ12_RS18755 WP_038429729.1 3597288..3598010(-) (comFC) [Bacillus sp. PS95]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGCTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACTATCCCCTCATTCGCCTGAATAATGAGAAGCAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.5

100

0.975

Multiple sequence alignment