Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ12_RS18775 Genome accession   NZ_CP150160
Coordinates   3600770..3601459 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. PS95     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3595770..3606459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS18740 (NSQ12_18740) flgN 3595951..3596433 (-) 483 WP_339175349.1 flagellar protein FlgN -
  NSQ12_RS18745 (NSQ12_18745) flgM 3596449..3596715 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ12_RS18750 (NSQ12_18750) - 3596796..3597215 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  NSQ12_RS18755 (NSQ12_18755) comFC 3597288..3598010 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  NSQ12_RS18760 (NSQ12_18760) comFB 3597974..3598270 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ12_RS18765 (NSQ12_18765) comFA 3598330..3599721 (-) 1392 WP_080529868.1 ATP-dependent helicase ComFA Machinery gene
  NSQ12_RS18770 (NSQ12_18770) - 3599827..3600672 (-) 846 WP_003244125.1 DegV family protein -
  NSQ12_RS18775 (NSQ12_18775) degU 3600770..3601459 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ12_RS18780 (NSQ12_18780) degS 3601542..3602699 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ12_RS18785 (NSQ12_18785) - 3602916..3603569 (+) 654 WP_003227979.1 YigZ family protein -
  NSQ12_RS18790 (NSQ12_18790) tagV 3603569..3604744 (+) 1176 WP_064671519.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NSQ12_RS18795 (NSQ12_18795) - 3604817..3605893 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=964098 NSQ12_RS18775 WP_003219701.1 3600770..3601459(-) (degU) [Bacillus sp. PS95]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=964098 NSQ12_RS18775 WP_003219701.1 3600770..3601459(-) (degU) [Bacillus sp. PS95]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment