Detailed information NTG0096408

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DAETH_RS09220
• Genome accession: NZ_AP026560
• Coordinates: 1835991..1837211 (+)
• Length: 406 a.a.
• NCBI ID: WP_264774606.1
• Uniprot ID: -
• Organism: Deinococcus aetherius strain ST0316
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1830991..1842211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DAETH_RS09195 (DAETH_18460)	-	1831462..1832334 (+)	873	WP_264774601.1	alpha/beta fold hydrolase	-
DAETH_RS09200 (DAETH_18470)	gatA	1832341..1833822 (-)	1482	WP_264774602.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-
DAETH_RS09205 (DAETH_18480)	-	1833893..1834654 (-)	762	WP_264774603.1	DUF4388 domain-containing protein	-
DAETH_RS09210 (DAETH_18490)	scpB	1834767..1835312 (-)	546	WP_264774604.1	SMC-Scp complex subunit ScpB	-
DAETH_RS09215 (DAETH_18500)	-	1835309..1835920 (-)	612	WP_264774605.1	L-threonylcarbamoyladenylate synthase	-
DAETH_RS09220 (DAETH_18510)	pilC	1835991..1837211 (+)	1221	WP_264774606.1	type II secretion system F family protein	Machinery gene
DAETH_RS09225 (DAETH_18520)	-	1837596..1840916 (-)	3321	WP_264774607.1	chromosome segregation SMC family protein	-
DAETH_RS09230 (DAETH_18530)	-	1840957..1841499 (-)	543	WP_264774608.1	GerMN domain-containing protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44226.36 Da
• Isoelectric Point: 9.9984

>NTDB_id=96408 DAETH_RS09220 WP_264774606.1 1835991..1837211(+) (pilC) [Deinococcus aetherius strain ST0316]
MPVYEYRVRDRSGKVLKSQMEAETQAQVRDALRAKNLLIVEIKPPKTGLNADIKIPGMSDRPPNLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQIENKTLQGIIKSLRADVESGTPLSEALVKHPKVFNRLYINLVRAGETSGTLDSILERIAAFQEKE
LALRGKLKSALTYPVVVLVFAIGITYFLLTTIVPQFAGILAQLNAPLPFITKMLMAVSDFLRNSGLLIFVFIAVIVFAYR
WFYKMPKGRVVVDRLKLRLPVFGGLLQKSAISSFARTFGLLISSGVNIIESLEITKGTAGNAIVEETIENAKNVVMVGDP
MSASLATSKVFPPMVVSMVAIGEETGALDDMLGKVGDFYDREVDEAVESLTAAIEPLMIVFLGGIVGTIVAGMFLPMFSI
IGQLSK

Nucleotide

• Length: 1221 bp

>NTDB_id=96408 DAETH_RS09220 WP_264774606.1 1835991..1837211(+) (pilC) [Deinococcus aetherius strain ST0316]
ATGCCGGTCTACGAATACCGCGTCCGGGACCGTTCCGGGAAGGTCCTGAAGTCCCAGATGGAGGCCGAGACCCAGGCACA
GGTGCGCGACGCCCTGCGGGCCAAGAACCTCCTCATCGTCGAGATCAAGCCGCCCAAGACCGGCCTGAACGCCGATATCA
AGATCCCCGGCATGAGCGACCGTCCGCCCAACCTCAAGCAGGTGGCGGTGTTTTCCAAGCAGCTCGCCACCCTGATCAAC
GCGGGCGTGCCGCTCGTGCAGTCGCTCGCCATCCTGCAACGTCAGATCGAGAACAAGACCCTCCAGGGCATCATCAAGAG
TCTGCGCGCGGACGTGGAGAGCGGAACCCCCCTCAGCGAGGCGCTCGTCAAGCACCCCAAGGTCTTCAACCGCCTGTACA
TCAACCTCGTGCGCGCGGGCGAGACGAGCGGCACGCTCGACAGCATCCTGGAGCGCATCGCCGCCTTTCAGGAAAAGGAA
CTCGCCCTGCGCGGCAAGCTCAAGAGCGCGCTGACGTACCCGGTGGTCGTGCTGGTGTTTGCCATCGGCATCACGTACTT
CCTGCTCACCACCATTGTGCCGCAGTTCGCGGGCATCCTCGCGCAGCTCAACGCGCCGCTGCCCTTCATCACCAAGATGC
TGATGGCCGTCTCGGACTTCCTCAGGAACTCCGGGCTGCTCATCTTCGTCTTCATCGCCGTCATCGTGTTCGCCTACCGC
TGGTTTTACAAGATGCCGAAGGGGCGCGTGGTCGTGGACCGCCTCAAGCTGCGGTTGCCCGTCTTCGGCGGCCTGCTGCA
AAAGAGCGCGATCAGCTCCTTCGCGCGCACCTTCGGGCTCCTGATCAGCTCGGGCGTGAACATCATCGAGAGCCTGGAGA
TCACCAAGGGCACGGCGGGCAACGCCATCGTGGAGGAGACCATCGAGAACGCCAAGAACGTCGTGATGGTCGGCGACCCC
ATGAGCGCGAGTCTGGCGACGAGCAAGGTCTTTCCGCCGATGGTCGTCAGCATGGTCGCCATCGGCGAGGAGACGGGCGC
ACTCGACGACATGCTGGGCAAGGTGGGTGACTTCTACGACCGCGAGGTGGACGAGGCCGTCGAAAGCCTCACCGCCGCCA
TCGAACCCCTGATGATCGTCTTCCTGGGCGGCATCGTCGGAACCATCGTGGCGGGCATGTTCCTTCCGATGTTCAGCATC
ATCGGCCAGCTGAGCAAGTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	60.591	100	0.606
pilG	Neisseria meningitidis 44/76-A	36.476	99.261	0.362
pilG	Neisseria gonorrhoeae MS11	36.476	99.261	0.362