Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NST79_RS19570 Genome accession   NZ_CP150159
Coordinates   3774904..3775023 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus sp. PS196     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3769904..3780023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS19545 (NST79_19545) albG 3770075..3770776 (+) 702 WP_212060273.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NST79_RS19550 (NST79_19550) - 3770782..3772151 (-) 1370 Protein_3792 YncE family protein -
  NST79_RS19555 (NST79_19555) - 3772190..3773545 (-) 1356 WP_015250986.1 YncE family protein -
  NST79_RS19560 (NST79_19560) - 3773542..3773772 (-) 231 WP_069703618.1 hypothetical protein -
  NST79_RS19565 (NST79_19565) rapF 3773775..3774920 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  NST79_RS19570 (NST79_19570) phrF 3774904..3775023 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NST79_RS19575 (NST79_19575) - 3775138..3775587 (+) 450 WP_339225783.1 YbaK/EbsC family protein -
  NST79_RS19580 (NST79_19580) speB 3775619..3776491 (-) 873 WP_003227545.1 agmatinase -
  NST79_RS19585 (NST79_19585) speE 3776552..3777382 (-) 831 WP_003227543.1 spermidine synthase -
  NST79_RS19590 (NST79_19590) - 3777585..3779660 (+) 2076 WP_033883392.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=964024 NST79_RS19570 WP_009968329.1 3774904..3775023(+) (phrF) [Bacillus sp. PS196]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=964024 NST79_RS19570 WP_009968329.1 3774904..3775023(+) (phrF) [Bacillus sp. PS196]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487