Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NST79_RS12875 Genome accession   NZ_CP150159
Coordinates   2482615..2483685 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus sp. PS196     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2477615..2488685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS12830 (NST79_12830) tapA 2478093..2478854 (-) 762 WP_212058893.1 amyloid fiber anchoring/assembly protein TapA -
  NST79_RS12835 (NST79_12835) - 2479126..2479452 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NST79_RS12840 (NST79_12840) - 2479494..2479673 (-) 180 WP_029726723.1 YqzE family protein -
  NST79_RS12845 (NST79_12845) comGG 2479745..2480119 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NST79_RS12850 (NST79_12850) comGF 2480120..2480503 (-) 384 WP_080529536.1 ComG operon protein ComGF Machinery gene
  NST79_RS12855 (NST79_12855) comGE 2480529..2480876 (-) 348 WP_080529537.1 ComG operon protein 5 Machinery gene
  NST79_RS12860 (NST79_12860) comGD 2480860..2481291 (-) 432 WP_212058895.1 competence type IV pilus minor pilin ComGD Machinery gene
  NST79_RS12865 (NST79_12865) comGC 2481281..2481577 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NST79_RS12870 (NST79_12870) comGB 2481591..2482628 (-) 1038 WP_212058897.1 comG operon protein ComGB Machinery gene
  NST79_RS12875 (NST79_12875) comGA 2482615..2483685 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NST79_RS12880 (NST79_12880) - 2483897..2484094 (-) 198 WP_014480259.1 CBS domain-containing protein -
  NST79_RS12885 (NST79_12885) corA 2484096..2485049 (-) 954 WP_015483432.1 magnesium transporter CorA -
  NST79_RS12890 (NST79_12890) - 2485192..2486520 (+) 1329 WP_003230150.1 hemolysin family protein -
  NST79_RS12895 (NST79_12895) rsbRD 2486573..2487409 (-) 837 WP_046381180.1 RsbT co-antagonist protein RsbRD -
  NST79_RS12905 (NST79_12905) mgsR 2487633..2488013 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  NST79_RS12910 (NST79_12910) - 2488245..2488490 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=963997 NST79_RS12875 WP_004399124.1 2482615..2483685(-) (comGA) [Bacillus sp. PS196]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=963997 NST79_RS12875 WP_004399124.1 2482615..2483685(-) (comGA) [Bacillus sp. PS196]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1