Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NSQ21_RS12555 Genome accession   NZ_CP150158
Coordinates   2449388..2449819 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus sp. PS210     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2444388..2454819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ21_RS12505 (NSQ21_12505) sinI 2444582..2444755 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSQ21_RS12510 (NSQ21_12510) sinR 2444789..2445124 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSQ21_RS12515 (NSQ21_12515) tasA 2445217..2446002 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  NSQ21_RS12520 (NSQ21_12520) - 2446066..2446638 (-) 573 WP_003230181.1 signal peptidase I -
  NSQ21_RS12525 (NSQ21_12525) tapA 2446622..2447383 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ21_RS12530 (NSQ21_12530) - 2447655..2447981 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSQ21_RS12535 (NSQ21_12535) - 2448023..2448202 (-) 180 WP_003230176.1 YqzE family protein -
  NSQ21_RS12540 (NSQ21_12540) comGG 2448273..2448647 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  NSQ21_RS12545 (NSQ21_12545) comGF 2448648..2449031 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  NSQ21_RS12550 (NSQ21_12550) comGE 2449057..2449404 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  NSQ21_RS12555 (NSQ21_12555) comGD 2449388..2449819 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  NSQ21_RS12560 (NSQ21_12560) comGC 2449809..2450105 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NSQ21_RS12565 (NSQ21_12565) comGB 2450119..2451156 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  NSQ21_RS12570 (NSQ21_12570) comGA 2451143..2452213 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NSQ21_RS12575 (NSQ21_12575) corA 2452625..2453578 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=963915 NSQ21_RS12555 WP_004398628.1 2449388..2449819(-) (comGD) [Bacillus sp. PS210]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=963915 NSQ21_RS12555 WP_004398628.1 2449388..2449819(-) (comGD) [Bacillus sp. PS210]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1