Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSQ21_RS12510 Genome accession   NZ_CP150158
Coordinates   2444789..2445124 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. PS210     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439789..2450124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ21_RS12490 (NSQ21_12490) gcvT 2440381..2441469 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  NSQ21_RS12495 (NSQ21_12495) - 2441911..2443584 (+) 1674 WP_003230203.1 SNF2-related protein -
  NSQ21_RS12500 (NSQ21_12500) - 2443605..2444399 (+) 795 WP_003230200.1 YqhG family protein -
  NSQ21_RS12505 (NSQ21_12505) sinI 2444582..2444755 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSQ21_RS12510 (NSQ21_12510) sinR 2444789..2445124 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSQ21_RS12515 (NSQ21_12515) tasA 2445217..2446002 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  NSQ21_RS12520 (NSQ21_12520) - 2446066..2446638 (-) 573 WP_003230181.1 signal peptidase I -
  NSQ21_RS12525 (NSQ21_12525) tapA 2446622..2447383 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ21_RS12530 (NSQ21_12530) - 2447655..2447981 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSQ21_RS12535 (NSQ21_12535) - 2448023..2448202 (-) 180 WP_003230176.1 YqzE family protein -
  NSQ21_RS12540 (NSQ21_12540) comGG 2448273..2448647 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  NSQ21_RS12545 (NSQ21_12545) comGF 2448648..2449031 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  NSQ21_RS12550 (NSQ21_12550) comGE 2449057..2449404 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  NSQ21_RS12555 (NSQ21_12555) comGD 2449388..2449819 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  NSQ21_RS12560 (NSQ21_12560) comGC 2449809..2450105 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=963911 NSQ21_RS12510 WP_003226345.1 2444789..2445124(+) (sinR) [Bacillus sp. PS210]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=963911 NSQ21_RS12510 WP_003226345.1 2444789..2445124(+) (sinR) [Bacillus sp. PS210]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1