Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABE75_RS06580 Genome accession   NZ_AP028869
Coordinates   1343716..1344453 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JBEHAAB-19-0176     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338716..1349453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABE75_RS06555 tyrA 1339090..1340211 (+) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABE75_RS06560 pheA 1340254..1341414 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABE75_RS06565 pheL 1341513..1341560 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AABE75_RS06570 raiA 1341664..1342005 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABE75_RS06575 - 1342266..1343612 (-) 1347 WP_024181829.1 IS4-like element IS4 family transposase -
  AABE75_RS06580 comL 1343716..1344453 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABE75_RS06585 rluD 1344588..1345568 (+) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABE75_RS06590 yfiH 1345565..1346296 (+) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  AABE75_RS06595 clpC 1346426..1348999 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=96383 AABE75_RS06580 WP_000197686.1 1343716..1344453(-) (comL) [Escherichia coli strain JBEHAAB-19-0176]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=96383 AABE75_RS06580 WP_000197686.1 1343716..1344453(-) (comL) [Escherichia coli strain JBEHAAB-19-0176]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment