Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OO986_RS14665 Genome accession   NZ_AP026552
Coordinates   3128925..3129635 (+) Length   236 a.a.
NCBI ID   WP_181390202.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3123925..3134635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS14645 (VV208B2_27450) greB 3124335..3124817 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  OO986_RS14650 (VV208B2_27460) - 3125053..3127377 (+) 2325 WP_058645399.1 Tex family protein -
  OO986_RS14655 (VV208B2_27470) - 3127461..3127931 (-) 471 WP_011078928.1 hypothetical protein -
  OO986_RS14660 (VV208B2_27480) bioH 3128069..3128836 (-) 768 WP_013572568.1 pimeloyl-ACP methyl ester esterase BioH -
  OO986_RS14665 comF 3128925..3129635 (+) 711 WP_181390202.1 ComF family protein Machinery gene
  OO986_RS14670 (VV208B2_27500) nfuA 3129766..3130350 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  OO986_RS14675 (VV208B2_27510) nudE 3130466..3131020 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  OO986_RS14680 (VV208B2_27520) cysQ 3131035..3131862 (+) 828 WP_108694620.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OO986_RS14685 (VV208B2_27530) - 3131989..3132750 (-) 762 WP_011149212.1 type II secretion system protein N -
  OO986_RS14690 (VV208B2_27540) - 3132752..3133243 (-) 492 WP_011078935.1 type II secretion system protein M -
  OO986_RS14695 (VV208B2_27550) gspL 3133251..3134450 (-) 1200 WP_108677196.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27230.95 Da        Isoelectric Point: 9.6643

>NTDB_id=96384 OO986_RS14665 WP_181390202.1 3128925..3129635(+) (comF) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQHIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=96384 OO986_RS14665 WP_181390202.1 3128925..3129635(+) (comF) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTCTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTACCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGCCTAAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCACCTTTGCT
CATCCAACACATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGTTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment