Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSQ83_RS12460 Genome accession   NZ_CP150157
Coordinates   2432438..2432773 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. PS217     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2427438..2437773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ83_RS12440 (NSQ83_12440) gcvT 2428030..2429118 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  NSQ83_RS12445 (NSQ83_12445) - 2429560..2431233 (+) 1674 WP_198878635.1 SNF2-related protein -
  NSQ83_RS12450 (NSQ83_12450) - 2431254..2432048 (+) 795 WP_003230200.1 YqhG family protein -
  NSQ83_RS12455 (NSQ83_12455) sinI 2432231..2432404 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSQ83_RS12460 (NSQ83_12460) sinR 2432438..2432773 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSQ83_RS12465 (NSQ83_12465) tasA 2432866..2433651 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  NSQ83_RS12470 (NSQ83_12470) - 2433715..2434287 (-) 573 WP_072692741.1 signal peptidase I -
  NSQ83_RS12475 (NSQ83_12475) tapA 2434271..2435032 (-) 762 WP_198878634.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ83_RS12480 (NSQ83_12480) - 2435304..2435630 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSQ83_RS12485 (NSQ83_12485) - 2435672..2435851 (-) 180 WP_072175549.1 YqzE family protein -
  NSQ83_RS12490 (NSQ83_12490) comGG 2435922..2436296 (-) 375 WP_133953114.1 ComG operon protein ComGG Machinery gene
  NSQ83_RS12495 (NSQ83_12495) comGF 2436297..2436680 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  NSQ83_RS12500 (NSQ83_12500) comGE 2436706..2437053 (-) 348 WP_080529537.1 ComG operon protein 5 Machinery gene
  NSQ83_RS12505 (NSQ83_12505) comGD 2437037..2437468 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  NSQ83_RS12510 (NSQ83_12510) comGC 2437458..2437754 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=963828 NSQ83_RS12460 WP_003226345.1 2432438..2432773(+) (sinR) [Bacillus sp. PS217]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=963828 NSQ83_RS12460 WP_003226345.1 2432438..2432773(+) (sinR) [Bacillus sp. PS217]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1