Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   NSQ16_RS18450 Genome accession   NZ_CP150155
Coordinates   3551874..3553031 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus sp. PS108     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546874..3558031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS18420 (NSQ16_18420) - 3547126..3547545 (-) 420 WP_230488622.1 TIGR03826 family flagellar region protein -
  NSQ16_RS18425 (NSQ16_18425) comFC 3547618..3548340 (-) 723 WP_230488621.1 comF operon protein ComFC Machinery gene
  NSQ16_RS18430 (NSQ16_18430) comFB 3548304..3548600 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ16_RS18435 (NSQ16_18435) comFA 3548660..3550051 (-) 1392 WP_106073350.1 ATP-dependent helicase ComFA Machinery gene
  NSQ16_RS18440 (NSQ16_18440) - 3550159..3551004 (-) 846 WP_003227986.1 DegV family protein -
  NSQ16_RS18445 (NSQ16_18445) degU 3551102..3551791 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ16_RS18450 (NSQ16_18450) degS 3551874..3553031 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ16_RS18455 (NSQ16_18455) - 3553248..3553901 (+) 654 WP_230488620.1 YigZ family protein -
  NSQ16_RS18460 (NSQ16_18460) - 3553901..3554893 (+) 993 WP_230488619.1 LCP family protein -
  NSQ16_RS18465 (NSQ16_18465) - 3555493..3555957 (+) 465 WP_228394534.1 hypothetical protein -
  NSQ16_RS18470 (NSQ16_18470) - 3556013..3556468 (+) 456 WP_095010556.1 hypothetical protein -
  NSQ16_RS18475 (NSQ16_18475) - 3556518..3556970 (+) 453 WP_014481058.1 hypothetical protein -
  NSQ16_RS18480 (NSQ16_18480) - 3557046..3557825 (+) 780 WP_076457519.1 membrane-spanning protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=963693 NSQ16_RS18450 WP_003227983.1 3551874..3553031(-) (degS) [Bacillus sp. PS108]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=963693 NSQ16_RS18450 WP_003227983.1 3551874..3553031(-) (degS) [Bacillus sp. PS108]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCTTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1