Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ16_RS18435 Genome accession   NZ_CP150155
Coordinates   3548660..3550051 (-) Length   463 a.a.
NCBI ID   WP_106073350.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3543660..3555051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS18400 (NSQ16_18400) flgL 3543832..3544728 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NSQ16_RS18405 (NSQ16_18405) flgK 3544739..3546262 (-) 1524 WP_088327073.1 flagellar hook-associated protein FlgK -
  NSQ16_RS18410 (NSQ16_18410) flgN 3546281..3546763 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NSQ16_RS18415 (NSQ16_18415) flgM 3546779..3547045 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ16_RS18420 (NSQ16_18420) - 3547126..3547545 (-) 420 WP_230488622.1 TIGR03826 family flagellar region protein -
  NSQ16_RS18425 (NSQ16_18425) comFC 3547618..3548340 (-) 723 WP_230488621.1 comF operon protein ComFC Machinery gene
  NSQ16_RS18430 (NSQ16_18430) comFB 3548304..3548600 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ16_RS18435 (NSQ16_18435) comFA 3548660..3550051 (-) 1392 WP_106073350.1 ATP-dependent helicase ComFA Machinery gene
  NSQ16_RS18440 (NSQ16_18440) - 3550159..3551004 (-) 846 WP_003227986.1 DegV family protein -
  NSQ16_RS18445 (NSQ16_18445) degU 3551102..3551791 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ16_RS18450 (NSQ16_18450) degS 3551874..3553031 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ16_RS18455 (NSQ16_18455) - 3553248..3553901 (+) 654 WP_230488620.1 YigZ family protein -
  NSQ16_RS18460 (NSQ16_18460) - 3553901..3554893 (+) 993 WP_230488619.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52597.67 Da        Isoelectric Point: 9.8808

>NTDB_id=963691 NSQ16_RS18435 WP_106073350.1 3548660..3550051(-) (comFA) [Bacillus sp. PS108]
MKVPTEKNISFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELVPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=963691 NSQ16_RS18435 WP_106073350.1 3548660..3550051(-) (comFA) [Bacillus sp. PS108]
GTGAAGGTGCCAACTGAAAAGAACATTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAAATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGTTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.408

100

0.974