Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ16_RS18445 Genome accession   NZ_CP150155
Coordinates   3551102..3551791 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. PS108     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546102..3556791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS18410 (NSQ16_18410) flgN 3546281..3546763 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NSQ16_RS18415 (NSQ16_18415) flgM 3546779..3547045 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ16_RS18420 (NSQ16_18420) - 3547126..3547545 (-) 420 WP_230488622.1 TIGR03826 family flagellar region protein -
  NSQ16_RS18425 (NSQ16_18425) comFC 3547618..3548340 (-) 723 WP_230488621.1 comF operon protein ComFC Machinery gene
  NSQ16_RS18430 (NSQ16_18430) comFB 3548304..3548600 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ16_RS18435 (NSQ16_18435) comFA 3548660..3550051 (-) 1392 WP_106073350.1 ATP-dependent helicase ComFA Machinery gene
  NSQ16_RS18440 (NSQ16_18440) - 3550159..3551004 (-) 846 WP_003227986.1 DegV family protein -
  NSQ16_RS18445 (NSQ16_18445) degU 3551102..3551791 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ16_RS18450 (NSQ16_18450) degS 3551874..3553031 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ16_RS18455 (NSQ16_18455) - 3553248..3553901 (+) 654 WP_230488620.1 YigZ family protein -
  NSQ16_RS18460 (NSQ16_18460) - 3553901..3554893 (+) 993 WP_230488619.1 LCP family protein -
  NSQ16_RS18465 (NSQ16_18465) - 3555493..3555957 (+) 465 WP_228394534.1 hypothetical protein -
  NSQ16_RS18470 (NSQ16_18470) - 3556013..3556468 (+) 456 WP_095010556.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=963692 NSQ16_RS18445 WP_003219701.1 3551102..3551791(-) (degU) [Bacillus sp. PS108]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=963692 NSQ16_RS18445 WP_003219701.1 3551102..3551791(-) (degU) [Bacillus sp. PS108]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTTAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1